Guy Perriere's Papers


Here are links to all my scientific papers listed by reverse chronological order. For some of them, the full text is available as a PDF file. To read these files you need the free Acrobat Reader program.

Articles published in international journals

Guindon, S., and Perrière, G. (2001) Intragenomic base content variation is a potential source of biases when searching for horizontally transferred genes. Mol. Biol. Evol., 18, 1838-1840. [ Full text ]

Lavire, C., Louis, D., Perrière, G., Briolay, J., Normand P. and Cournoyer, B. (2001) Analysis of pFQ31, a 8551-bp cryptic plasmid from the symbiotic nitrogen-fixiong actinomycete Frankia. FEMS Microbiol. Lett., 197, 111-116. [ Full text ]

Perrière, G., Duret, L. and Gouy, M. (2000) HOBACGEN: database system for comparative genomics in bacteria. Genome Res., 10, 379-385. [ Full text ]

Perrière, G., Bessières, P. and Labedan, B. (2000) EMGLib: the Enhanced Microbial Genomes Library. Nucleic Acids Res., 27, 68-71. [ Full text ]

Goncalves, I., Robinson, M., Perrière, G. et Mouchiroud, D. (1999) JaDis: computing distances between nucleic acid sequences. , 15, 425-426. [ Full text ]

Perrière, G., Bessières, P. and Labedan, B. (1999) The enhanced microbial genomes library. Nucleic Acids Res., 27, 63-65. [ Full text ]

Perrière, G., Gouy, M. and Gojobori, T. (1998) The non-redundant Bacillus subtilis (NRSub) database: update 1998. Nucleic Acids Res., 26, 60-62. [ Full text ]

Perrière, G., Moszer, I. and Gojobori, T. (1997) The NRSub database: update 1997. Nucleic Acids Res., 25, 53-56. [ Full text ]

Duret, L., Gasteiger, E. and Perrière, G. (1996) LalnView: a graphical viewer for pairwise sequence alignments. Comput. Applic. Biosci., 12, 507-510. [ Abstract ]

Perrière, G., Lobry, J.R. and Thioulouse, J. (1996) Correspondence discriminant analysis: a multivariate method for comparing classes of protein and nucleic acid sequences. Comput. Applic. Biosci., 12, 519-524. [ Abstract ]

Perrière, G. and Gouy, M. (1996) WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie, 78, 364-369. [ Full text ]

Perrière, G. and Thioulouse, J. (1996) On-line tools for sequence retrieval and multivariate statistics in molecular biology. Comput. Applic. Biosci., 12, 63-69. [ Abstract ]

Perrière, G., Moszer, I. and Gojobori, T. (1996) NRSub: a non-redundant database for Bacillus subtilis. Nucleic Acids Res., 24, 41-45. [ Abstract ]

Perrière, G., Gouy, M. and Gojobori, T. (1994) NRSub: a non-redundant data base for the Bacillus subtilis genome. Nucleic Acids Res., 22, 5525-5529. [ Full text ]

Perrière, G. and Gautier, C. (1993) ColiGene: object-centered representation for the study of E.coli gene expressivity by sequence analysis. Biochimie, 75, 415-422. [ Abstract ]

Cortay, J.C., Nègre, D., Galinier, A., Duclos, B., Perrière, G. and Cozzone, A.J. (1991) Regulation of the acetate operon in Escherichia coli: purification and functional characterization of the IclR repressor. EMBO J., 10, 675-679. [ Abstract ]

Galinier, A., Bleicher, F., Nègre, D. Perrière, G., Duclos, B., Cozzone, A.J. and Cortay, J.-C. (1991) Primary structure of the intergenic region between aceK and iclR in the Escherichia coli chromosome. Gene, 97, 149-150. [ Abstract ]

Proceedings and book chapters

Perrière, G., Chevenet, F., Dorkeld, F., Vermat, T. and Gautier, C. (1994) Building integrated systems for data representation and analysis in molecular biology. In Proceedings of the 27th Hawaï International Conference on System Sciences, Vol.5, Hunter, L. (ed.), IEEE Computer Society Press, pp. 89-97. [ Full text ]

Médigue, C., Willamowsky, J., Schmeltzer, O., Uvietta, P., Rechenmann, F., Chevenet, F., Perrière, G. and Gautier, C. (1993) Modeling tasks for problem solving in molecular biology. In Proceedings of the Artificial Intelligence and Genome Workshop, Ganascia, J.G. (ed.), IJCAI, pp. 67-76. [ Abstract ]

Dorkeld, F., Perrière, G. and Gautier, C. (1993) Object-oriented modelling in molecular biology. In Proceedings of the Artificial Intelligence and Genome Workshop, Ganascia, J.G. (ed.), IJCAI, pp. 99-106. [ Full text ]

Schmeltzer, O., Médigue, C., Uvietta, P., Rechenmann, F., Dorkeld, F., Perrière, G. and Gautier, C. (1993) Building large knowledge bases in molecular biology. In Proceedings of the First International Conference on Intelligent Systems for Molecular Biology, Hunter, L., Searls, D. and Shavlik, J. (eds.), AAAI/MIT Press, pp. 345-353. [ Abstract / Full text ]

Perrière, G., Dorkeld, F., Rechenmann, F. and Gautier, C. (1993) Object-oriented knowledge bases for the analysis of prokaryotic and eukaryotic genomes. In Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, Hunter, L., Searls, D. and Shavlik, J. (eds.), AAAI/MIT Press, pp. 319-327. [ Abstract / Full text ]


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