 9h30-10h30 | A few problems of comparative genomics in yeasts | |
| Bernard Dujon - Laboratoire de Génétique Moléculaire des Levures, Institut Pasteur | ||
 10h30-11h | Coffee break | |
| 11h-12h | Promoter consensus prediction from a whole prokaryote genome | |
| Marie-France Sagot - Institut Pasteur (work done with Anne Vanet - Institut de Biologie Physico-Chimique, Laurent Marsan - Institut Gaspard Monge, and Agnès Labigne - Institut Pasteur) | ||
| 12h-14h | Lunch | |
| 14h-15h | Genome functional annotation from the point of view of a biologist/bioinformatician: the questions we wish to ask | |
| Bernard Jacq - Laboratoire de Génétique et Physiologie du Développement, Institut de Biologie du Développement de Marseille | ||
| 15h-15h20 | Coffee break | |
| 15h20-16h20 | EuGene: a tool for gene prediction (Arabidopsis thaliana) which exploits other tools | |
| Thomas Schiex - Département de Biométrie et Intelligence Artificielle, INRA Toulouse | ||
| 16h20-16h40 | Coffee break | |
| 16h40-17h40 | From bags of codons to real genes: translation from B. subtilis point of view | |
| Eduardo Rocha - Unité de Régulation de l'Expression Génétique, Institut Pasteur; Atelier de BioInformatique, Université de Paris VI | ||
| 17h40-18h | Coffee break | |
| 18h-19h | Problem presentations (Collaboration proposals)(I) | |
| 18h-18h30 : Problem 1 | ||
| 18h30-19h : Problem 2 | ||
| 20h | Diner (between 120 and 150 francs) |
| 9h30-10h30 | Evaluation of gene finding programs using gene contigs and application to the genome of Arabidopsis thaliana | |
| Pierre Rouzé - Laboratoire Associé à l'INRA, Flanders Interuniversity Institute for Biotechnology, Gand | ||
| 10h30-11h | Coffee break | |
| 11h-12h | An integration infrastructure for genome annotation | |
| Christian Overton - Department of Genetics and Department of Computer and Information Science, University of Pennsylvania, États-Unis | ||
| 12h-14h | Lunch | |
| 14h-15h | Comparison of coding DNA - Combining DNA and protein information | |
| Christian N. S. Pedersen - University of Århus, Danemark | ||
| 15h-15h20 | Coffee break | |
| 15h20-16h20 | Annotation of the Arabidopsis genome: State of art and future ways | |
| Sébastien Aubourg - Laboratoire Associé à l'INRA, Flanders Interuniversity Institute for Biotechnology, Gand | ||
| 16h20-16h40 | Coffee break | |
| 16h40-17h40 | Comparison of a completely automatic and a clean annotation of the Lactococcus lactis genome: how we did it and the results | |
| Alexei Sorokin - INRA, Jouy-en-Josas | ||
| 17h40-18h | Coffee break | |
| 18h-19h | Problem presentations (Collaboration proposals)(II) | |
| 18h-18h30 : Problem 3 | ||
| 18h30-19h : Problem 4 |
| 9h30-10h30 | Genomic localization and genetic information | |
| Christian Gautier - Laboratoire de Biométrie, Génétique et Biologie des Populations, Université Claude Bernard, Lyon | ||
| 10h30-11h | Coffee break | |
| 11h-12h | Reconstitution des systèmes complets dans l'annotation : un exemple les transporteurs de type ABC | |
| Gwennaele Fichant - Laboratoire Chimie Bactérienne, Institut Fédératif de Recherche du CNRS, Biologie Structurale et Microbiologie, Marseille | ||
| 12h-14h | Lunch | |
| 14h-15h | Approche statistique de la comparaison de génomes complets | |
| Laurent Bize - Département de Biométrie et Intelligence Artificielle, INRA Toulouse | ||
| 15h-15h20 | Coffee break | |
| 15h20-16h20 | Stratégie d'annotation de génomes non-finis | |
| Lionel Frangeul - Laboratoire de Génomique des Microorganismes Pathogènes, Institut Pasteur | ||
| 16h20-16h40 | Coffee break | |
| 16h40-17h40 | La copie de travail du projet de séquencage du Génome humain | |
| William Saurin - Centre National de Séquençage, Évry |
