Some referecences

Observation (dating from 15/02/2000): This bibliography is far from being complete. All participants are quite welcome to send me other references should they wish to (or pointers to programs or web pages). Just send them to me at the address: sagot@pasteur.fr. Thanks in advance.

Hlavacek W. S., and Savageau M. A. (1996) Rules for coupled expression of regulator and effector genes in inducible circuits. J. Mol. Biol. 255:121-139.

Mendoza L., Thieffry D. and Alvarez-Buylla E. R. (1999) Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis. Bioinformatics 15:593-606.

Sánchez L., van Helden J. & Thieffry D. (1997) Establishment of the dorso-ventral pattern during the embryonic development of Drosophila melagonaster: a logical analysis. Journal of Theoretical Biology 189:377-389.

Savageau M. A. (1998) Demand theory of gene regulation: Quantitative development of the theory. Genetics 149:1665-1676.

Savageau M. A. (1998) Demand theory of gene regulation: Quantitative application to the lactose and maltose operons of Escherichia coli. Genetics 149:1677-1691.

Thieffry D. and Thomas R. (1995) Dynamical behaviour of biological regulatory networks. II. Immunity control in bacteriophage lambda. Bulletin of Mathematical Biology 57:277-295.

Thieffry D., Huerta A., Peréz-Rueda E. and Collado-Vides, J. (1998) From specific gene regulation to global regulatory networks: a characterisation of Escherichia coli transcriptional network. BioEssays 20:433-440.

Thieffry, D. and Thomas R. (1995) Dynamical behaviour of biological regulatory networks. II. Immunity control in bacteriophage lambda. Bulletin of Mathematical Biology 57:277-295.

van Helden J., André B. and Collado-Vides J. (1998) Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281(5):827-42.

van Helden J., André B. and Collado-Vides J. (2000) A web site for the computational analysis of yeast regulatory sequences. Yeast 16(2):177-187.

van Helden J. , del Olmo M. and Pérez-Ortín J. E. (2000) Genomic computational analysis of yeast downstream sequences reveals putative polyadenylation efficiency elements. Nucleic Acids Research 28(4):1000-1010.

van Helden J., Rios A. and Collado-Vides J. (2000). Extracting cis-acting regulatory elements from yeast non-coding sequences by analysis of spaced dyads. accepted in Nucleic Acids Research.



Concerning the work of Jacques van Helden, you may also consult
this page (EBI) and this one (Université Libre de Bruxelles).

Concerning the work of Claude Jacq's team at the ENS Ulm, Paris, including Philippe Marc, you may also consult this page (french version) or this one (english version).

Back to the schedule