Some references

Bachellerie J. P., Michot B., Nicoloso M, Balakin A. Ni J. and Fournier M. J., Antisense snoRNAs: a family of nucleolar RNAs with long complementarities to rRNA. TIBS 20, 261-264, 1995.

Billoud B., Kontic M. and Viari A., Palingol : a declarative programming language to describe nucleic acids secondary structures and to scan sequence databases. Nuc. Acids. Res. 24, 1395-1403, 1996. (paper, figures, glossary, grammar, program and text (in french) of the presentation made at the Institut Pasteur)

Bouthinon D., Soldano H., Billoud B., Apprentissage d'un concept commun à un ensemble d'objets dont la description est hypothétique : application à la découverte de structures secondaires d'ARN. Act. 11ème. Jour. Fr. Appr., 1996.

Bouthinon D., Apprentissage d'un concept commun à un ensemble d'objets dont la description est hypothétique : application à la découverte de structures secondaires d'ARN, PhD Thesis, University of Paris XIII, 1996.

Bouthinon D., Soldano H., Un cadre de programmation logique inductive pour apprendre un concept à partir d'exemples ambigus, accepted to be presented at the 11ième Congrès Reconnaissance des Formes et Intelligence Artificielle (RFIA '98), 20-22 Janvier 1998, Clermont-Ferrand.

Bouthinon D., Soldano H., An inductive logic programming framework to learn a concept from ambiguous examples, submitted to the 10th European Conference on Machine Learning, April 21-24 1998, Chemnitz (Germany).

Brion P., Westhof E., Hierarchy and dynamics of RNA folding. Annu. Rev. Biophys. Biomol. Struct. 26, 113-137, 1997.

Chenuil, A., Solignac, M. and Michot, B. Evolution of the large-subunit ribosomal RNA binding site for protein L23/25. Mol. Biol. and Evol. 14: 578-588, 1997.

Chetouani, F., Monestié, P., Thébault, P., Gaspin, C. and Michot, B. ESSA: an integrated and interactive computer tool for analysing RNA secondary structure. Nucleic Acids Res. 25: 3514-3522, 1997. (programme)

Corpet, F. and Michot, B., RNAlign program : alignment of RNA sequences using both primary and secondary structure. Comput. Applic. Biosci. 10 (4), 389-399, 1994.

El-Mabrouk N. and Lisacek F., Very fast identification of RNA motifs in genomic DNA. Application to tRNA search in the yeast genome. J. Mol. Biol., 264:46-55, 1996. (program)

El-Mabrouk N., Recherche approchée de motifs - Application à des séquences biologiques structurées. PhD Thesis, University of Paris VII, 1996. (text)

Fichant G. A., Burks C., J. Mol. Biol., Identifying potential tRNA genes in genomic sequences. J. Mol. Biol. 220:659-671, 1991.

Fontana W., Konings D. A. M., Stadler P. F., and Schuster P., Statistics of RNA secondary structures. Biopolymers 33:1389-1404, 1993.

Gesteland R. F., Atkins J. F., The RNA world. Cold Spring Harbor Laboratory Press, 1993.

Gruener W., Giegerich R., Strothmann D., Reidys C., Weber J., Hofacker I. L., Stadler, and Schuster P., Analysis of RNA sequence structure maps by exhaustive enumeration. I. Neutral Networks. Monath. Chem. 127:355-374, 1996.

Gruener W., Giegerich R., Strothmann D., Reidys C., Weber J., Hofacker I. L., Stadler, and Schuster P., Analysis of RNA sequence structure maps by exhaustive enumeration. II. Structure of Neutral Networks and Shape Space Covering. Monath. Chem. 127:375-389, 1996.

Lefebvre F., Grammaires S-attribuées multi-bandes et applications à l'analyse automatique de séquences biologiques. PhD Thesis. École Polytechnique, 1997. (text, program)

Nicoloso M., Qu L. H., Michot B. and Bachellerie J. P. Intron-encoded, antisense small nucleolar RNAs: The characterization of nine novel species points to their direct role as guides for the 2?-O-ribose methylation of rRNAs. J. Mol. Biol. 260: 178-195, 1996.

Reidys C., Stadler P., and Schuster P., Generic properties of combinatory maps. Neutral networks of RNA secondary structures. Bull. Math. Biol. 59:339-397, 1997.

Schuster P., Fontana W., Stadler P. F., and Hofacker I. L., From sequences to shapes and back. A Case study in RNA secondary structures. Proc. Roy. Soc. (London) B 255:279-184, 1994.

Schuster P., Landscapes and molecular evolution. Physica D 107:351-365, 1997.

Tacker M., Stadler P. F., Bornberg-Bauer E. G., Hofacker I. L., and Schuster P., Algorithm independent properties of RNA secondary structure predictions. Eur. Biophys. J. 25:115-130, 1996.

Additional references

Almost all the papers from P. Schuster's group may be recovered, either from the site of his laboratory at the Institute for Theoretical Chemistry at Vienna, or at the site of the Santa Fe Institute.

A more complete bibliography than the one given in this page has also been compiled by Christine Gaspin and Thomas Schiex and may be recovered from the site of their laboratory at the INRA of Toulouse. The references pertinent to their respective presentations is given in the copy of their slides (see the schedule).

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