A List of Reproducible Research Web Pages

This is a list of papers with dynamic (Shiny enabled) RMarkdown reproducibility pages.

For each paper, you can click on the RRLink (first column) to go to the reproducibility page. You can also click on the DOI to go to the published article, or on the PDF link to get the pdf file.

You can click on column headings to sort the list, choose the number of papers displayed on each page, browse through the pages, and search the whole list.


Reproducible Research link Authors Article title Journal name Publication year DOI PDF
Reproducible Research link Authors Article title Journal name Publication year DOI PDF
RRLink Siberchicot A, Julien-Laferrière A, Dufour AB, Thioulouse J, Dray S adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data The R Journal 2017 The R Journal (2017) 9:2, pages 198-212 PDF
RRLink Slimani N, Guilbert E, El Ayni F, Jrad A, Boumaiza M, Thioulouse J The use of STATICO and COSTATIS, two exploratory three-ways analysis methods. An application to the ecology of aquatic Heteroptera in the Medjerda watershed (Tunisia) Environmental and Ecological Statistics 2017 10.1007/s10651-017-0370-6 PDF
RRLink Benkhoua N et al. Management of the mycorrhizal soil infectivity with Crotalaria ochroleuca, an indigenous wild legume in the tropics: Impacts onmicrobial functional diversity involved in phosphorus mobilizationprocesses in a sahelian soil Ecological Engineering 2017 10.1016/j.ecoleng.2017.01.010 PDF
RRLink Wahbi S et al. Impact of Wheat/Faba Bean Mixed Cropping or Rotation Systems on Soil Microbial Functionalities Frontiers in Plant Science 2016 10.3389/fpls.2016.01364 PDF
RRLink Thioulouse J, Prin Y, Duponnois R Multivariate analyses in soil microbial ecology: a new paradigm Environmental and Ecological Statistics 2012 10.1007/s10651-012-0198-z PDF
RRLink Dray S et al. Community ecology in the age of multivariate multiscale spatial analysis Ecological Monographs 2012 10.1890/11-1183.1 PDF
RRLink Thioulouse J. Simultaneous analysis of a sequence of paired ecological tables: a comparison of several methods Annals of Applied Statistics 2011 10.1214/10-AOAS372 PDF
RRLink Valiente-Moro C, Thioulouse J, Chauve C, Zenner L Diversity, geographic distribution and habitat specific variations of microbiota in natural populations of the chicken mite, Dermanyssus gallinae Journal of Medical Entomology 2011 10.1603/ME10113 PDF
RRLink Valiente-Moro C, Thioulouse J, Chauve C, Normand P, Zenner L Bacterial taxa associated with the hematophagous mite, Dermanyssus gallinae detected by 16S rDNA PCR amplification and TTGE fingerprint Research in Microbiology 2009 10.1016/j.resmic.2008.10.006 PDF
RRLink Charif D, Thioulouse J, Lobry JR, Perrière G Online synonymous codon usage analyses with the ade4 and seqinR packages Bioinformatics 2005 10.1093/bioinformatics/bti037 PDF
RRLink Perrière G, Lobry J, Thioulouse J Correspondence discriminant analysis : a multivariate method for comparing classes of protein and nucleic acid sequences Computer Applications in the Biosciences 1996 10.1093/bioinformatics/12.6.519 PDF
RRLink Thioulouse J, Lobry JR Co-inertia analysis of amino-acid physico-chemical properties and protein composition with the ADE package. Computer Applications in the Biosciences 1995 10.1093/bioinformatics/11.3.321 PDF

Jean Thioulouse