DeCoLT - Lateral Gene Transfer, Rearrangement, Reconciliation

developed by Murray PATTERSON, with the advice of Gergely SZOLLOSI, Vincent DAUBIN and Eric TANNIER





A more recent implementation of DeCo called DeCoSTAR, get it here.

It includes the original DeCo algorithm with transfer, boltzmann sampling, and other various options.

The software DeCoLT computes adjacencies (or any type of relation, like regulation, interaction, functional relationships) between ancestral genes from gene phylogenies reconciled with a species phylogeny according to duplications, losses and lateral gene transfer. It takes as input (1) a species tree (2) a set of extant genes (3) a set of exant adjacencies (relations) between extant genes and (4) reconciled gene trees which leaves are the extant genes. It outputs ancestral species, genes, and adjacencies. It also highlights the duplications or transfers involving several genes.

It is distributed under Cecill open source Licence.

For the software, use the following links:

Get DeCoLT

Use DeCoLT

Page hosted by the PRABI and LBBE, Last modification June 2013

Contact: Eric dot Tannier at inria dot fr

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