codonmodel::CodonModel Class Reference

List of all members.

Public Member Functions
def	__init__
def	__getitem__
def	get_max
def	next_all

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Detailed Description

Class of Models for codons defined as a dictionnary {phase:NuclModel}.

A CodonModel is built from a unique NuclModel, with additional omega parameter, defined as
a multiplicative factor on non-synonymous substitutions (default: 1). The genetic code is the standard one.

The syntax to build a model is like:

m=CodonModel(model="T92(theta=0.1,rCgT=10)",omega=0.01)

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The documentation for this class was generated from the following file:

• codonmodel.py