nuclmodel::NuclModel Class Reference

Inheritance diagram for nuclmodel::NuclModel:

List of all members.

Public Member Functions
def	__init__

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Detailed Description

Class of Models defined from usual single-site nucleotide
models.

    Context-dependent substitution rates can be ADDED to the
Model. They are denoted as ruXvY, which describes the substitution
from base X with left context word u and right context word v to base
Y. The rate is a factor of X->Y substitution rate in the context
independent model.

    The syntax to build a model is like:
    
    m=NuclModel(model="T92(theta=0.1,rCgT=10)")

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Member Function Documentation

def nuclmodel::NuclModel::__init__	(		self,
			kw
	)

Create a Model.

Keyword argument to build directly the Model from a file in
the appropriate format: [fic=string].

Reimplemented from model::Model.

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The documentation for this class was generated from the following file:

• nuclmodel.py