PBIL

CpGProD (CpG Island Promoter Detection)

BBE contribution to PBIL in Lyon, France

CpGProD is a mammalian-specific software which proposes to identify the promoter regions associated with CpG islands (CGIs). CpGProD uses the structural characteristics of the CGIs associated with promoters (start CGIs). In a first step, CpGProD searches for all the CGIs located over the sequences and, in a second step, CpGProD identifies start CGIs and orientation of the potential promoters.
Choose your species:
Human (and other mammals excepting Muridae)
Mouse (and other Muridae)

Enter your sequences in FASTA format:
The sequences have to be masked with RepeatMasker

or

Enter your file in FASTA format:
The sequences have to be masked with RepeatMasker

Option for graphical output:
identical scale for all the sequences
individual scale for each sequences

If you use CpGProD in a published work, please cite the following reference:
Ponger, L. and Mouchiroud, D. (2001) CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences. Bioinformatics, 18, 631-633 [ Abstract ]

If you have problems or comments...

Back to PBIL home page