CpGProD (CpG Island Promoter Detection)
BBE contribution to PBIL in Lyon, France
CpGProD is a mammalian-specific
software which proposes to identify the promoter regions associated with
CpG islands (CGIs). CpGProD uses the structural characteristics of
the CGIs associated with promoters (start CGIs). In a first step, CpGProD
searches for all the CGIs located over the sequences and, in a second step,
CpGProD identifies start CGIs and orientation of the potential promoters.
If you use CpGProD in a published work, please cite the following reference:
- Ponger, L. and Mouchiroud, D. (2001) CpGProD: identifying CpG islands associated
with transcription start sites in large genomic mammalian sequences.
Bioinformatics, 18, 631-633
[ Abstract ]
If you have problems or comments...
Back to PBIL home page