CRAN Package Check Results for Maintainer ‘Murray Efford <murray.efford at otago.ac.nz>’

Last updated on 2024-07-27 11:49:27 CEST.

Package ERROR NOTE OK
ipsecr 2 11
openCR 13
secr 13
secrdesign 2 11
secrlinear 2 2 9

Package ipsecr

Current CRAN status: NOTE: 2, OK: 11

Version: 1.4.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: ipsecr-internal.Rd: detectfn, addCovariates, sim.popn, sim.capthist, popn, capthist ipsecr-package.Rd: sim.popn, sim.capthist, usage, makeStart, Parallel ipsecr.fit.Rd: mask, detectfn, verify, setNumThreads ipsecrdemo.Rd: capthist, read.capthist, secrdemo plot.ipsecr.Rd: Detection functions, detectfnplot plotProxy.Rd: detectfn predict.ipsecr.Rd: predictDsurface Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package openCR

Current CRAN status: NOTE: 13

Version: 2.2.6
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.2.6
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: AIC.openCR.Rd: LR.test LLsurface.Rd: LLsurface.secr cumMove.Rd: pointsInPolygon kernel.Rd: plot.mask, mask openCR-internal.Rd: secr.fit openCR-package.Rd: ovenCH openCR.fit.Rd: mask, detector, detectfn, setNumThreads, secr.fit par.openCR.fit.Rd: Parallel read.inp.Rd: RMarkInput, unRMarkInput simulate.Rd: random numbers, sim.popn, sim.capthist strata.Rd: session stratify.Rd: join, MS.capthist ucare.Rd: split.capthist utility.Rd: intervals Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 2.2.6
Check: installed package size
Result: NOTE installed size is 6.3Mb sub-directories of 1Mb or more: exampledata 1.5Mb libs 3.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package secr

Current CRAN status: NOTE: 13

Version: 4.6.9
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 4.6.9
Check: installed package size
Result: NOTE installed size is 5.2Mb sub-directories of 1Mb or more: R 1.5Mb libs 1.9Mb Flavors: r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package secrdesign

Current CRAN status: NOTE: 2, OK: 11

Version: 2.9.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: GAoptim.Rd: detectfn, kofnGA Lambda.Rd: traps, mask, detectfn count.Rd: predict.secr, coef.secr make.scenarios.Rd: sim.capthist optimalSpacing.Rd: traps, detectfn predict.simulations.Rd: derived.secr, region.N.secr run.scenarios.Rd: read.traps, make.grid, join, sim.capthist, secr.fit, pdot saturation.Rd: detectfn scenarioSummary.Rd: kfn secrdesign-package.Rd: make.grid Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Package secrlinear

Current CRAN status: ERROR: 2, NOTE: 2, OK: 9

Version: 1.2.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: linearmask.object.Rd: mask make.line.Rd: make.grid plotmethods.Rd: plot.mask read.linearmask.Rd: SpatialLinesDataFrame showpath.Rd: get.shortest.paths utility.Rd: edges, SpatialLinesDataFrame Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘secrlinear-vignette.Rmd’ using rmarkdown Quitting from lines 585-611 [secrdesign] (secrlinear-vignette.Rmd) Error: processing vignette 'secrlinear-vignette.Rmd' failed with diagnostics: $ operator is invalid for atomic vectors --- failed re-building ‘secrlinear-vignette.Rmd’ SUMMARY: processing the following file failed: ‘secrlinear-vignette.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64