Last updated on 2026-03-20 05:52:06 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 12 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [98s/210s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.550, system: 0.046, elapsed: 2.103 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.710, system: 0.064, elapsed: 14.101 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.017, elapsed: 0.944 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.781, system: 0.752, elapsed: 55.154 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.003, elapsed: 0.212 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.015, system: 0.909, elapsed: 73.354 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.520, system: 0.032, elapsed: 1.917 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.620, system: 0.068, elapsed: 11.261 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.014, elapsed: 0.405 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.534, system: 0.639, elapsed: 17.164 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.007, elapsed: 0.193 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.631, system: 0.784, elapsed: 31.639 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.528, system: 0.031, elapsed: 1.988 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.549, system: 0.053, elapsed: 11.540 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.014, elapsed: 0.251 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.385, system: 0.594, elapsed: 7.561 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.003, elapsed: 0.185 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.285, system: 0.259, elapsed: 1.027 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.836, system: 0.995, elapsed: 23.329 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.543, system: 0.034, elapsed: 2.138 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.752, system: 0.057, elapsed: 12.118 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.015, elapsed: 0.747 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.649, system: 0.699, elapsed: 40.486 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.005, elapsed: 0.190 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.739, system: 0.629, elapsed: 18.539 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.807, system: 1.467, elapsed: 75.143 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/457s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.608, system: 0.043, elapsed: 2.663 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.556, system: 0.044, elapsed: 13.164 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.019, elapsed: 1.072 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.820, system: 0.848, elapsed: 117.860 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.003, elapsed: 0.458 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.947, system: 0.977, elapsed: 136.148 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.549, system: 0.030, elapsed: 4.397 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.594, system: 0.052, elapsed: 24.189 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.016, elapsed: 1.042 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.791, system: 0.746, elapsed: 84.621 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.169 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.879, system: 0.867, elapsed: 115.592 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.541, system: 0.032, elapsed: 1.637 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.601, system: 0.086, elapsed: 13.819 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.015, elapsed: 0.741 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.688, system: 0.677, elapsed: 42.571 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.004, elapsed: 0.180 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.291, system: 0.312, elapsed: 1.129 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.181, system: 1.152, elapsed: 60.852 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.666, system: 0.043, elapsed: 2.047 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.730, system: 0.096, elapsed: 13.945 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.017, elapsed: 0.795 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.941, system: 0.837, elapsed: 99.342 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.002, elapsed: 0.165 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.531, system: 0.586, elapsed: 20.267 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.964, system: 1.611, elapsed: 137.440 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64