Last updated on 2025-12-09 23:52:07 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.610, system: 0.047, elapsed: 2.530 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.328, system: 0.101, elapsed: 11.468 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.013, elapsed: 0.278 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.898, system: 0.229, elapsed: 5.157 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.007, elapsed: 0.220 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.774, system: 0.434, elapsed: 20.417 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.609, system: 0.049, elapsed: 1.924 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.802, system: 0.317, elapsed: 15.118 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.206, system: 0.020, elapsed: 0.321 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.303, system: 0.304, elapsed: 6.263 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.010, elapsed: 0.293 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.669, system: 0.751, elapsed: 24.719 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.693, system: 0.070, elapsed: 2.561 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.866, system: 0.299, elapsed: 14.188 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.018, elapsed: 0.309 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.071, system: 0.283, elapsed: 5.555 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.008, elapsed: 0.253 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.291, system: 0.252, elapsed: 1.081 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.987, system: 0.985, elapsed: 24.891 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.679, system: 0.057, elapsed: 2.085 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.578, system: 0.282, elapsed: 11.188 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.018, elapsed: 0.237 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.119, system: 0.316, elapsed: 5.266 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.010, elapsed: 0.241 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.077, system: 0.745, elapsed: 16.833 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.484, system: 1.461, elapsed: 36.606 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/153s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.711, system: 0.064, elapsed: 3.065 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.657, system: 0.210, elapsed: 17.444 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.018, elapsed: 0.328 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.942, system: 0.271, elapsed: 6.447 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.005, elapsed: 0.259 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.230, system: 0.595, elapsed: 28.401 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.781, system: 0.090, elapsed: 2.911 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.030, system: 0.428, elapsed: 18.222 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.014, elapsed: 0.359 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.905, system: 0.185, elapsed: 8.564 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.004, elapsed: 0.342 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.638, system: 0.756, elapsed: 31.434 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.664, system: 0.044, elapsed: 3.443 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.610, system: 0.127, elapsed: 18.169 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.012, elapsed: 0.437 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.775, system: 0.173, elapsed: 7.607 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.003, elapsed: 0.338 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.187, system: 0.235, elapsed: 1.388 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.278, system: 0.637, elapsed: 32.777 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.645, system: 0.037, elapsed: 3.437 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.509, system: 0.083, elapsed: 18.567 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.013, elapsed: 0.382 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.755, system: 0.184, elapsed: 7.364 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.348 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.735, system: 0.469, elapsed: 19.493 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.674, system: 0.815, elapsed: 50.920 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64