HaDeX2: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
Processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS). 'HaDeX2' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including uncertainty propagation, data aggregation and visualization on 3D structure. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the accompanying 'shiny' app.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.5) |
| Imports: | checkmate, data.table, dplyr, ggplot2, glue, gridExtra, magick, purrr, readr, readxl, r3dmol (≥ 0.1.2), remotes, stringi, tidyr, ggiraph |
| Suggests: | bookdown, digest, knitr, magrittr, pander, renv, rmarkdown, microbenchmark, testthat, vdiffr, scales, shiny, spelling |
| Published: | 2026-02-09 |
| DOI: | 10.32614/CRAN.package.HaDeX2 (may not be active yet) |
| Author: | Weronika Puchala 
[cre, aut],
Michal Burdukiewicz
[aut],
Dominik Rafacz [ctb],
Krystyna Grzesiak [ctb] |
| Maintainer: | Weronika Puchala <puchala.weronika at gmail.com> |
| License: | GPL-3 |
| URL: | https://hadexversum.github.io/HaDeX2/ |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README, NEWS, ChangeLog |
| CRAN checks: | HaDeX2 results |
Documentation:
| Reference manual: | HaDeX2.html , HaDeX2.pdf |
| Vignettes: |
Importing data (source, R code) Calculations (source, R code) Example HDX-MS data analysis (source, R code) Glossary (source, R code) Mass calculation (source, R code) Quality control (source, R code) Statistics (source, R code) Data aggregation (source, R code) Code usage (source, R code) Comparison between versions (source, R code) Data visualization (source, R code) |
Downloads:
| Package source: | HaDeX2_1.0.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): HaDeX2_1.0.0.tgz, r-oldrel (arm64): HaDeX2_1.0.0.tgz, r-release (x86_64): HaDeX2_1.0.0.tgz, r-oldrel (x86_64): HaDeX2_1.0.0.tgz |
Linking:
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