A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | ggplot2, utils, Seurat, shiny, shinydashboard, DT, shinycssloaders, patchwork, tools, colourpicker, shinyWidgets, scales, SeuratObject, shinyjqui, shinyBS, ggalluvial, dplyr, ComplexHeatmap, qs2, circlize, reshape2, stats, htmltools |
| Suggests: | BiocManager, DESeq2, MAST, roxygen2, devtools |
| Published: | 2025-03-13 |
| DOI: | 10.32614/CRAN.package.SeuratExplorer |
| Author: | Yongchao Zhang [aut, cre] (https://github.com/fentouxungui) |
| Maintainer: | Yongchao Zhang <zhangyongchao at nibs.ac.cn> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | SeuratExplorer results |
| Reference manual: | SeuratExplorer.pdf |
| Package source: | SeuratExplorer_0.1.0.tar.gz |
| Windows binaries: | r-devel: SeuratExplorer_0.1.0.zip, r-release: SeuratExplorer_0.1.0.zip, r-oldrel: SeuratExplorer_0.1.0.zip |
| macOS binaries: | r-devel (arm64): SeuratExplorer_0.1.0.tgz, r-release (arm64): SeuratExplorer_0.1.0.tgz, r-oldrel (arm64): SeuratExplorer_0.1.0.tgz, r-devel (x86_64): SeuratExplorer_0.1.0.tgz, r-release (x86_64): SeuratExplorer_0.1.0.tgz, r-oldrel (x86_64): SeuratExplorer_0.1.0.tgz |
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