A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
Version: | 0.1.0 |
Depends: | R (≥ 4.1.0) |
Imports: | ggplot2, utils, Seurat, shiny, shinydashboard, DT, shinycssloaders, patchwork, tools, colourpicker, shinyWidgets, scales, SeuratObject, shinyjqui, shinyBS, ggalluvial, dplyr, ComplexHeatmap, qs2, circlize, reshape2, stats, htmltools |
Suggests: | BiocManager, DESeq2, MAST, roxygen2, devtools |
Published: | 2025-03-13 |
DOI: | 10.32614/CRAN.package.SeuratExplorer |
Author: | Yongchao Zhang [aut, cre] (https://github.com/fentouxungui) |
Maintainer: | Yongchao Zhang <zhangyongchao at nibs.ac.cn> |
License: | GPL (≥ 3) |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | SeuratExplorer results |
Reference manual: | SeuratExplorer.pdf |
Package source: | SeuratExplorer_0.1.0.tar.gz |
Windows binaries: | r-devel: SeuratExplorer_0.1.0.zip, r-release: not available, r-oldrel: SeuratExplorer_0.1.0.zip |
macOS binaries: | r-devel (arm64): SeuratExplorer_0.1.0.tgz, r-release (arm64): SeuratExplorer_0.1.0.tgz, r-oldrel (arm64): SeuratExplorer_0.1.0.tgz, r-devel (x86_64): SeuratExplorer_0.1.0.tgz, r-release (x86_64): SeuratExplorer_0.1.0.tgz, r-oldrel (x86_64): SeuratExplorer_0.1.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=SeuratExplorer to link to this page.