cuperdec: Cumulative Percent Decay Curve Generator
Calculates and visualises cumulative percent 'decay' curves, which are typically calculated from metagenomic taxonomic profiles. These can be used to estimate the level of expected 'endogenous' taxa at different abundance levels retrieved from metagenomic samples, when comparing to samples of known sampling site or source. Method described in Fellows Yates, J. A. et. al. (2021) Proceedings of the National Academy of Sciences USA <doi:10.1073/pnas.2021655118>.
| Version: | 1.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | dplyr, ggplot2, magrittr, readr, rlang, tidyr |
| Suggests: | knitr, rmarkdown, testthat, tibble |
| Published: | 2021-09-12 |
| DOI: | 10.32614/CRAN.package.cuperdec |
| Author: | James A. Fellows Yates
 [aut, cre] |
| Maintainer: | James A. Fellows Yates <jfy133 at gmail.com> |
| BugReports: | https://github.com/jfy133/cuperdec/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/jfy133/cuperdec |
| NeedsCompilation: | no |
| Language: | en-GB |
| Citation: | cuperdec citation info |
| Materials: | README NEWS |
| CRAN checks: | cuperdec results |
Documentation:
| Reference manual: | cuperdec.pdf |
| Vignettes: |
Introduction to cuperdec |
Downloads:
| Package source: | cuperdec_1.1.0.tar.gz |
| Windows binaries: | r-devel: cuperdec_1.1.0.zip, r-release: cuperdec_1.1.0.zip, r-oldrel: cuperdec_1.1.0.zip |
| macOS binaries: | r-release (arm64): cuperdec_1.1.0.tgz, r-oldrel (arm64): cuperdec_1.1.0.tgz, r-release (x86_64): cuperdec_1.1.0.tgz, r-oldrel (x86_64): cuperdec_1.1.0.tgz |
| Old sources: | cuperdec archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=cuperdec to link to this page.