Here is a list of all class members with links to the classes they belong to:

- c -

• c : bpp::Bracket
• c1_ : bpp::AdaptiveKernelDensityEstimation
• c2_ : bpp::AdaptiveKernelDensityEstimation
• callCount_ : bpp::AbstractOptimizationStopCondition
• cdiv() : bpp::EigenValue< Real >
• cdivi : bpp::EigenValue< Real >
• cdivr : bpp::EigenValue< Real >
• center() : bpp::PrincipalComponentAnalysis , bpp::VectorTools
• CENTI() : bpp::NumConstants
• changeKeyvals() : bpp::KeyvalTools
• check_() : bpp::DualityDiagram
• clean_() : bpp::MultiRange< T >
• clear() : bpp::MultiRange< T > , bpp::ParametrizableCollection< N > , bpp::RangeCollection< T > , bpp::RangeSet< T >
• clear_() : bpp::MultiRange< T > , bpp::RangeSet< T >
• clearChanged() : bpp::ParametrizableCollection< N >
• clone() : bpp::AbstractNumericalDerivative , bpp::AliasParameterListener , bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AutoCorrelationTransitionMatrix , bpp::AutoParameter , bpp::BetaDiscreteDistribution , bpp::BfgsMultiDimensions , bpp::BinaryOperator , bpp::BppBoolean , bpp::BppDouble , bpp::BppInteger , bpp::BppNotANumber , bpp::BppNumberI , bpp::BppString , bpp::BppUnsignedInteger , bpp::BppVector< T > , bpp::BrentOneDimension::BODStopCondition , bpp::BrentOneDimension , bpp::Clonable , bpp::ColMatrix< Scalar > , bpp::ComputationTree , bpp::ConjugateGradientMultiDimensions , bpp::ConstantDistribution , bpp::ConstantOperator , bpp::ConstraintInterface , bpp::ContingencyTableTest , bpp::CorrespondenceAnalysis , bpp::DataTable , bpp::DirectionFunction , bpp::DirichletDiscreteDistribution , bpp::DiscreteDistributionInterface , bpp::DownhillSimplexMethod , bpp::DownhillSimplexMethod::DSMStopCondition , bpp::DualityDiagram , bpp::ExponentialDiscreteDistribution , bpp::FirstOrderDerivable , bpp::FivePointsNumericalDerivative , bpp::Font , bpp::FullHmmTransitionMatrix , bpp::FunctionOperator< F > , bpp::FunctionStopCondition , bpp::GammaDiscreteDistribution , bpp::GaussianDiscreteDistribution , bpp::GlobalGraph , bpp::GoldenSectionSearch , bpp::GoldenSectionSearch::GSSStopCondition , bpp::HmmEmissionProbabilities , bpp::HmmLikelihood , bpp::HmmStateAlphabet , bpp::HmmTransitionMatrix , bpp::InfinityDerivableFirstOrderWrapper , bpp::InfinityDerivableSecondOrderWrapper , bpp::InfinityFunctionWrapper , bpp::IntervalConstraint , bpp::IntervalTransformedParameter , bpp::InvariantMixedDiscreteDistribution , bpp::LinearMatrix< Scalar > , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::MathOperator , bpp::MetaOptimizer , bpp::MetaOptimizerInfos , bpp::MixtureOfDiscreteDistributions , bpp::MultipleDiscreteDistribution , bpp::NegativeOperator , bpp::NewtonBacktrackOneDimension , bpp::NewtonBacktrackOneDimension::NBODStopCondition , bpp::NewtonOneDimension , bpp::NullOutputStream , bpp::Number< T > , bpp::OptimizationStopCondition , bpp::OptimizerInterface , bpp::OutputStream , bpp::Parameter , bpp::ParameterEvent , bpp::ParameterList , bpp::ParameterListener , bpp::ParametersStopCondition , bpp::ParametrizableCollection< N > , bpp::PlaceboTransformedParameter , bpp::Point2D< T > , bpp::PowellMultiDimensions , bpp::PowellMultiDimensions::PMDStopCondition , bpp::PrincipalComponentAnalysis , bpp::Range< T > , bpp::ReparametrizationDerivableFirstOrderWrapper , bpp::ReparametrizationDerivableSecondOrderWrapper , bpp::ReparametrizationFunctionWrapper , bpp::RescaledHmmLikelihood , bpp::RGBColor , bpp::RowMatrix< Scalar > , bpp::RTransformedParameter , bpp::SecondOrderDerivable , bpp::SimpleDiscreteDistribution , bpp::SimpleMultiDimensions , bpp::SimpleNewtonMultiDimensions , bpp::Simplex , bpp::StdErr , bpp::StdOut , bpp::StlOutputStream , bpp::StlOutputStreamWrapper , bpp::Table< T > , bpp::TestFunction , bpp::ThreePointsNumericalDerivative , bpp::TransformedParameter , bpp::TruncatedExponentialDiscreteDistribution , bpp::TwoPointsNumericalDerivative , bpp::UniformDiscreteDistribution
• cmyk2rgb() : bpp::ColorTools
• codes_ : bpp::AbstractFontManager< CodeType > , bpp::XFigColorManager
• col() : bpp::ColMatrix< Scalar > , bpp::LinearMatrix< Scalar > , bpp::Matrix< Scalar > , bpp::RowMatrix< Scalar >
• colCoord_ : bpp::DualityDiagram
• ColMatrix() : bpp::ColMatrix< Scalar >
• colNames_ : bpp::DataTable , bpp::Table< T >
• colorCount_ : bpp::PgfGraphicDevice
• colorIndex_ : bpp::PgfGraphicDevice
• ColorManager() : bpp::ColorManager< CodeType >
• colorManager_ : bpp::XFigGraphicDevice
• colors_ : bpp::AbstractColorSet , bpp::XFigColorManager
• ColorSet() : bpp::ColorSet
• ColorTools() : bpp::ColorTools
• colorToText() : bpp::SvgGraphicDevice
• cols_ : bpp::LinearMatrix< Scalar >
• columnMeans_ : bpp::PrincipalComponentAnalysis
• columnSd_ : bpp::PrincipalComponentAnalysis
• colWeights_ : bpp::DualityDiagram
• comment() : bpp::GraphicDevice , bpp::PgfGraphicDevice , bpp::SvgGraphicDevice , bpp::XFigGraphicDevice
• ComputationTree() : bpp::ComputationTree
• compute_() : bpp::DualityDiagram
• computeBackward_() : bpp::LogsumHmmLikelihood , bpp::RescaledHmmLikelihood
• computeCrossD2_ : bpp::AbstractNumericalDerivative
• computeD1_ : bpp::AbstractNumericalDerivative
• computeD2_ : bpp::AbstractNumericalDerivative
• computeD2EmissionProbabilities() : bpp::HmmEmissionProbabilities
• computeD2Forward_() : bpp::LogsumHmmLikelihood , bpp::RescaledHmmLikelihood
• computeD2Likelihood_() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• computeDEmissionProbabilities() : bpp::HmmEmissionProbabilities
• computeDForward_() : bpp::LogsumHmmLikelihood , bpp::RescaledHmmLikelihood
• computeDLikelihood_() : bpp::HmmLikelihood , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• computeFdr() : bpp::StatTools
• computeForward_() : bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::RescaledHmmLikelihood
• computeGrid() : bpp::FunctionTools
• computeHessianMatrix() : bpp::NumTools
• computeLikelihood() : bpp::LogsumHmmLikelihood
• computeVariancePercentagePerAxis() : bpp::DualityDiagram
• cond_ : bpp::TruncatedExponentialDiscreteDistribution
• ConjugateGradientMultiDimensions() : bpp::ConjugateGradientMultiDimensions
• ConstantDistribution() : bpp::ConstantDistribution
• ConstantOperator() : bpp::ConstantOperator
• constraint() : bpp::Parameter
• constraint_ : bpp::Parameter
• ConstraintException() : bpp::ConstraintException
• ConstraintInterface() : bpp::ConstraintInterface
• constraintMatch_ : bpp::InfinityFunctionWrapper
• constraintPolicy_ : bpp::AbstractOptimizer , bpp::DirectionFunction
• CONSTRAINTS_AUTO : bpp::AutoParameter
• CONSTRAINTS_IGNORE : bpp::AutoParameter
• CONSTRAINTS_KEEP : bpp::AutoParameter
• contains() : bpp::Range< T > , bpp::VectorTools
• containsAll() : bpp::VectorTools
• containsReciprocalRelations() : bpp::GlobalGraph , bpp::Graph
• content_ : bpp::PgfGraphicDevice , bpp::XFigGraphicDevice
• contentStarted_ : bpp::PgfGraphicDevice
• ContingencyTableGenerator() : bpp::ContingencyTableGenerator
• ContingencyTableTest() : bpp::ContingencyTableTest
• copy() : bpp::AssociationGraphObserver< N, E > , bpp::MatrixTools
• copyDown() : bpp::MatrixTools
• copyUp() : bpp::MatrixTools
• cor() : bpp::VectorTools
• correctDimension_ : bpp::DimensionException
• correctSize_ : bpp::BadSizeException
• CorrespondenceAnalysis() : bpp::CorrespondenceAnalysis
• cos() : bpp::VectorTools
• countValues() : bpp::VectorTools
• cov() : bpp::VectorTools
• covar() : bpp::MatrixTools
• covar_ : bpp::AdaptiveKernelDensityEstimation
• createNode() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• createNodeFromEdge() : bpp::GlobalGraph , bpp::Graph
• createNodeFromNode() : bpp::GlobalGraph , bpp::Graph
• createNodeOnEdge() : bpp::GlobalGraph , bpp::Graph
• createReader() : bpp::IoDiscreteDistributionFactory
• createSubList() : bpp::ParameterList
• createWriter() : bpp::IoDiscreteDistributionFactory
• crossDer2_ : bpp::AbstractNumericalDerivative
• cumProd() : bpp::VectorTools
• cumSum() : bpp::VectorTools
• currentCode_ : bpp::XFigColorManager
• currentLayer_ : bpp::AbstractGraphicDevice
• currentPosition_ : bpp::StringTokenizer
• currentValue_ : bpp::AbstractOptimizer
• CYAN : bpp::ColorTools