Here is a list of all class members with links to the classes they belong to:

- d -

• d : bpp::BrentOneDimension
• d2f() : bpp::InfinityDerivableSecondOrderWrapper , bpp::SecondOrderDerivable
• d2Likelihood_ : bpp::RescaledHmmLikelihood
• d2LogLik_ : bpp::AbstractHmmLikelihood
• d2LogLikelihood_ : bpp::LogsumHmmLikelihood
• d2Scales_ : bpp::RescaledHmmLikelihood
• d2Variable_ : bpp::AbstractHmmLikelihood
• d_ : bpp::EigenValue< Real >
• D_ : bpp::EigenValue< Real >
• DAGraphImpl() : bpp::DAGraphImpl< GraphImpl >
• data_ : bpp::DataTable , bpp::Table< T >
• DataTable() : bpp::DataTable
• DblGammaGreaterThanOne() : bpp::RandomTools
• DblGammaLessThanOne() : bpp::RandomTools
• DECI() : bpp::NumConstants
• decToHex() : bpp::RGBColor
• DEFAULT_GENERATOR : bpp::RandomTools
• DefaultColorSet() : bpp::DefaultColorSet
• defaultStopCondition_ : bpp::AbstractOptimizer
• deleteColumn() : bpp::DataTable , bpp::Table< T >
• deleteColumns() : bpp::Table< T >
• deletedEdgesUpdate() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::GraphObserver
• deletedNodesUpdate() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::GraphObserver
• deleteNode() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• deleteParameter() : bpp::ParameterList
• deleteParameter_() : bpp::AbstractParameterAliasable , bpp::AbstractParametrizable
• deleteParameters() : bpp::ParameterList
• deleteParameters_() : bpp::AbstractParameterAliasable , bpp::AbstractParametrizable
• deleteRow() : bpp::DataTable , bpp::Table< T >
• deleteRows() : bpp::Table< T >
• der1_ : bpp::AbstractNumericalDerivative
• der2_ : bpp::AbstractNumericalDerivative
• derivatives_ : bpp::MetaOptimizerInfos
• det() : bpp::LUDecomposition< Real > , bpp::MatrixTools
• df() : bpp::FirstOrderDerivable , bpp::InfinityDerivableFirstOrderWrapper
• df_ : bpp::ContingencyTableTest
• dg_ : bpp::BfgsMultiDimensions
• diag() : bpp::MatrixTools
• diff() : bpp::VectorTools
• diffln_ : bpp::BetaDiscreteDistribution
• dim_ : bpp::Simplex
• dimension() : bpp::Simplex
• dimension_ : bpp::DimensionException
• DimensionException() : bpp::DimensionException
• DIR_SEP : bpp::FileTools
• directed_ : bpp::GlobalGraph
• DirectionFunction() : bpp::DirectionFunction
• directoryExists() : bpp::FileTools
• directSum() : bpp::MatrixTools
• DirichletDiscreteDistribution() : bpp::DirichletDiscreteDistribution
• disc_ : bpp::NewtonBacktrackOneDimension
• DiscreteDistributionInterface() : bpp::DiscreteDistributionInterface
• DISCRETIZATION_EQUAL_INTERVAL : bpp::AbstractDiscreteDistribution
• DISCRETIZATION_EQUAL_PROB : bpp::AbstractDiscreteDistribution
• DISCRETIZATION_EQUAL_PROB_WHEN_POSSIBLE : bpp::AbstractDiscreteDistribution
• discretizationScheme_ : bpp::AbstractDiscreteDistribution
• discretize() : bpp::AbstractDiscreteDistribution , bpp::ConstantDistribution , bpp::DirichletDiscreteDistribution , bpp::DiscreteDistributionInterface , bpp::InvariantMixedDiscreteDistribution , bpp::MixtureOfDiscreteDistributions , bpp::SimpleDiscreteDistribution
• discretizeEqualIntervals() : bpp::AbstractDiscreteDistribution
• discretizeEqualProportions() : bpp::AbstractDiscreteDistribution
• displayBooleanResult() : bpp::ApplicationTools
• displayError() : bpp::ApplicationTools
• displayGauge() : bpp::ApplicationTools
• displayMessage() : bpp::ApplicationTools
• displayResult() : bpp::ApplicationTools
• displayTask() : bpp::ApplicationTools
• displayTaskDone() : bpp::ApplicationTools
• displayTime() : bpp::ApplicationTools
• displayUnlimitedGauge() : bpp::ApplicationTools
• displayWarning() : bpp::ApplicationTools
• dissociateEdge() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• dissociateNode() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E >
• dist_ : bpp::InvariantMixedDiscreteDistribution
• distribution_ : bpp::AbstractDiscreteDistribution
• dLikelihood_ : bpp::RescaledHmmLikelihood
• dLogLik_ : bpp::AbstractHmmLikelihood
• dLogLikelihood_ : bpp::LogsumHmmLikelihood
• doInit() : bpp::AbstractOptimizer , bpp::BfgsMultiDimensions , bpp::BrentOneDimension , bpp::ConjugateGradientMultiDimensions , bpp::DownhillSimplexMethod , bpp::GoldenSectionSearch , bpp::MetaOptimizer , bpp::NewtonBacktrackOneDimension , bpp::NewtonOneDimension , bpp::PowellMultiDimensions , bpp::SimpleMultiDimensions , bpp::SimpleNewtonMultiDimensions
• done() : bpp::BppApplication
• doStep() : bpp::AbstractOptimizer , bpp::BfgsMultiDimensions , bpp::BrentOneDimension , bpp::ConjugateGradientMultiDimensions , bpp::DownhillSimplexMethod , bpp::GoldenSectionSearch , bpp::MetaOptimizer , bpp::NewtonBacktrackOneDimension , bpp::NewtonOneDimension , bpp::PowellMultiDimensions , bpp::SimpleMultiDimensions , bpp::SimpleNewtonMultiDimensions
• DownhillSimplexMethod() : bpp::DownhillSimplexMethod
• drawCircle() : bpp::GraphicDevice , bpp::PgfGraphicDevice , bpp::SvgGraphicDevice , bpp::XFigGraphicDevice
• drawLine() : bpp::GraphicDevice , bpp::PgfGraphicDevice , bpp::SvgGraphicDevice , bpp::XFigGraphicDevice
• drawRect() : bpp::GraphicDevice , bpp::PgfGraphicDevice , bpp::SvgGraphicDevice , bpp::XFigGraphicDevice
• drawText() : bpp::GraphicDevice , bpp::PgfGraphicDevice , bpp::SvgGraphicDevice , bpp::XFigGraphicDevice
• dScales_ : bpp::RescaledHmmLikelihood
• DSMStopCondition : bpp::DownhillSimplexMethod , bpp::DownhillSimplexMethod::DSMStopCondition
• DualityDiagram() : bpp::DualityDiagram
• DuplicatedTableColumnNameException() : bpp::DuplicatedTableColumnNameException
• DuplicatedTableRowNameException() : bpp::DuplicatedTableRowNameException
• dVariable_ : bpp::AbstractHmmLikelihood
• DvipsColorSet() : bpp::DvipsColorSet