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• ODiscreteDistribution() : bpp::ODiscreteDistribution
• OneDimensionOptimizationTools() : bpp::OneDimensionOptimizationTools
• oneDimensionOptimizer() : bpp::SimpleMultiDimensions , bpp::SimpleNewtonMultiDimensions
• OParametrizable() : bpp::OParametrizable
• operator &() : bpp::ConstraintInterface , bpp::IntervalConstraint
• operator &=() : bpp::IntervalConstraint
• operator!=() : bpp::IntervalConstraint , bpp::Point2D< T > , bpp::Range< T >
• operator()() : bpp::AbstractDiscreteDistribution::Order , bpp::ColMatrix< Scalar > , bpp::DataTable , bpp::HmmEmissionProbabilities , bpp::LinearMatrix< Scalar > , bpp::Matrix< Scalar > , bpp::rangeComp_< T > , bpp::RowMatrix< Scalar > , bpp::Table< T > , bpp::VectorTools::order_Cmp_< T >
• operator*() : bpp::AssociationGraphImplObserver< N, E, GraphImpl >::EdgeIteratorClass< GraphIterator, is_const > , bpp::AssociationGraphImplObserver< N, E, GraphImpl >::NodeIteratorClass< GraphIterator, is_const > , bpp::AssociationGraphObserver< N, E >::EdgeIterator , bpp::AssociationGraphObserver< N, E >::NodeIterator , bpp::EdgesIteratorClass< Graph::ALLGRAPHITER, is_const > , bpp::EdgesIteratorClass< Graph::INCOMINGNEIGHBORITER, is_const > , bpp::EdgesIteratorClass< Graph::OUTGOINGNEIGHBORITER, is_const > , bpp::Graph::EdgeIterator , bpp::Graph::NodeIterator , bpp::NodesIteratorClass< Graph::ALLGRAPHITER, is_const > , bpp::NodesIteratorClass< Graph::INCOMINGNEIGHBORITER, is_const > , bpp::NodesIteratorClass< Graph::OUTGOINGNEIGHBORITER, is_const >
• operator+() : bpp::Range< T >
• operator+=() : bpp::Range< T >
• operator-() : bpp::Range< T >
• operator-=() : bpp::Range< T >
• operator<() : bpp::IntervalConstraint , bpp::Range< T > , bpp::RGBColor , bpp::StatTools::PValue_
• operator<<() : bpp::NullOutputStream , bpp::OutputStream , bpp::StdErr , bpp::StdOut , bpp::StlOutputStream , bpp::StlOutputStreamWrapper
• operator<=() : bpp::IntervalConstraint
• operator=() : bpp::AbstractDiscreteDistribution , bpp::AbstractDiscreteDistribution::Order , bpp::AbstractHmmLikelihood , bpp::AbstractHmmTransitionMatrix , bpp::AbstractNumericalDerivative , bpp::AbstractOptimizationStopCondition , bpp::AbstractOptimizer , bpp::AbstractParameterAliasable , bpp::AliasParameterListener , bpp::AssociationDAGraphImplObserver< N, E, DAGraphImpl > , bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationTreeGraphImplObserver< N, E, TreeGraphImpl > , bpp::AutoCorrelationTransitionMatrix , bpp::AutoParameter , bpp::BetaDiscreteDistribution , bpp::BppString , bpp::ColMatrix< Scalar > , bpp::ConstantDistribution , bpp::DataTable , bpp::DirectionFunction , bpp::ElementNotFoundException< T > , bpp::ExponentialDiscreteDistribution , bpp::FullHmmTransitionMatrix , bpp::FunctionWrapper , bpp::GammaDiscreteDistribution , bpp::GaussianDiscreteDistribution , bpp::GlobalGraph , bpp::InvariantMixedDiscreteDistribution , bpp::LinearMatrix< Scalar > , bpp::LogsumHmmLikelihood , bpp::LowMemoryRescaledHmmLikelihood , bpp::MetaOptimizer , bpp::MetaOptimizerInfos , bpp::MixtureOfDiscreteDistributions , bpp::MultiRange< T > , bpp::Number< T > , bpp::OptimizationEvent , bpp::Parameter , bpp::ParameterEvent , bpp::ParameterException , bpp::ParameterList , bpp::ParametrizableCollection< N > , bpp::Range< T > , bpp::RangeSet< T > , bpp::ReparametrizationFunctionWrapper , bpp::RescaledHmmLikelihood , bpp::RowMatrix< Scalar > , bpp::SimpleDiscreteDistribution , bpp::StlOutputStream , bpp::StlOutputStreamWrapper , bpp::Table< T > , bpp::TruncatedExponentialDiscreteDistribution , bpp::UniformDiscreteDistribution , bpp::VectorException< T >
• operator==() : bpp::Font , bpp::IntervalConstraint , bpp::Point2D< T > , bpp::Range< T > , bpp::RGBColor
• operator>() : bpp::IntervalConstraint
• operator>=() : bpp::IntervalConstraint
• operator[]() : bpp::DownhillSimplexMethod::Simplex , bpp::ParameterList , bpp::ParametrizableCollection< N > , bpp::RGBColor
• OptimizationEvent() : bpp::OptimizationEvent
• optimizationInitializationPerformed() : bpp::BackupListener , bpp::OptimizationListener
• OptimizationListener() : bpp::OptimizationListener
• optimizationStepPerformed() : bpp::BackupListener , bpp::OptimizationListener
• OptimizationStopCondition() : bpp::OptimizationStopCondition
• optimize() : bpp::AbstractOptimizer , bpp::BrentOneDimension , bpp::DownhillSimplexMethod , bpp::OptimizerInterface , bpp::PowellMultiDimensions
• optimizer() : bpp::MetaOptimizerInfos
• OptimizerInterface() : bpp::OptimizerInterface
• optimizers() : bpp::MetaOptimizer
• Order() : bpp::AbstractDiscreteDistribution::Order
• order() : bpp::VectorTools
• order_Cmp_() : bpp::VectorTools::order_Cmp_< T >
• OrderedSimplex() : bpp::OrderedSimplex
• orientate() : bpp::GlobalGraph , bpp::Graph
• orientGraphFrom_() : bpp::DAGraphImpl< GraphImpl >
• orthes() : bpp::EigenValue< Real >
• outgoingEdgesIterator() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• outgoingNeighborNodesIterator() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::AssociationGraphObserver< N, E > , bpp::GlobalGraph , bpp::Graph
• OutOfRangeException() : bpp::OutOfRangeException
• output() : bpp::BinaryOperator , bpp::ComputationTree , bpp::ConstantOperator , bpp::FunctionOperator< F > , bpp::MathOperator , bpp::NegativeOperator , bpp::Operator
• outputToDot() : bpp::AssociationGraphImplObserver< N, E, GraphImpl > , bpp::GlobalGraph , bpp::Graph
• overlap() : bpp::Range< T >