bpp-phyl3
3.0.0
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- e -
edgeToParenthesis() :
bpp::ExtendedNewick
Element() :
bpp::IODAG::Element
,
bpp::IOTree::Element
,
bpp::TreeTemplateTools::Element
EmbeddedModel() :
bpp::LG10_EX_EHO::EmbeddedModel
,
bpp::LGL08_CAT::EmbeddedModel
,
bpp::LLG08_EHO::EmbeddedModel
,
bpp::LLG08_EX2::EmbeddedModel
,
bpp::LLG08_EX3::EmbeddedModel
,
bpp::LLG08_UL2::EmbeddedModel
,
bpp::LLG08_UL3::EmbeddedModel
enable() :
bpp::TreeDrawingListener
,
bpp::TreeDrawingListenerAdapter
enableContinuousRates() :
bpp::NonHomogeneousSequenceSimulator
,
bpp::SimpleSubstitutionProcessSiteSimulator
enableDerivatives() :
bpp::AbstractTreeLikelihood
,
bpp::TreeLikelihoodInterface
enableEigenDecomposition() :
bpp::AbstractSubstitutionModel
,
bpp::AbstractTotallyWrappedSubstitutionModel
,
bpp::InMixedSubstitutionModel
,
bpp::MarkovModulatedSubstitutionModel
,
bpp::SubstitutionModelInterface
enableExtendedBootstrapProperty() :
bpp::Newick
enableFirstOrderDerivatives() :
bpp::AbstractPhyloLikelihood
,
bpp::AbstractTreeLikelihood
,
bpp::GlobalClockTreeLikelihoodFunctionWrapper
enableListener() :
bpp::TreeDrawingDisplayControler
enableSecondOrderDerivatives() :
bpp::AbstractPhyloLikelihood
,
bpp::AbstractTreeLikelihood
,
bpp::GlobalClockTreeLikelihoodFunctionWrapper
end() :
bpp::TreeIterator
EquilibriumFrequenciesFromModel() :
bpp::EquilibriumFrequenciesFromModel
EquilibriumFrequenciesFromTransitionMatrix() :
bpp::EquilibriumFrequenciesFromTransitionMatrix
EquiprobableSubstitutionModel() :
bpp::EquiprobableSubstitutionModel
erase() :
bpp::Context
eraseNeighborArrays() :
bpp::DRASDRTreeLikelihoodNodeData
,
bpp::DRTreeParsimonyNodeData
estimateDistanceMatrix() :
bpp::OptimizationTools
eval() :
bpp::ExtendedFloatEigen< R, C, EigenType >
EvolutionSequenceSimulator() :
bpp::EvolutionSequenceSimulator
evolve() :
bpp::AbstractMutationProcess
,
bpp::MutationProcess
,
bpp::NonHomogeneousSequenceSimulator
,
bpp::SimpleMutationProcess
evolveInternal() :
bpp::NonHomogeneousSequenceSimulator
,
bpp::SimpleSubstitutionProcessSiteSimulator
exchangeabilityMatrix() :
bpp::AbstractSubstitutionModel
,
bpp::AbstractTotallyWrappedSubstitutionModel
,
bpp::InMixedSubstitutionModel
,
bpp::MarkovModulatedSubstitutionModel
,
bpp::SubstitutionModelInterface
exp() :
bpp::ExtendedFloat
,
bpp::ExtendedFloatEigen< R, C, EigenType >
expandMatrix() :
bpp::LikelihoodCalculationOnABranch
,
bpp::LikelihoodCalculationSingleProcess
expandVector() :
bpp::LikelihoodCalculationOnABranch
,
bpp::LikelihoodCalculationSingleProcess
exponent_part() :
bpp::CWiseCompound< R, ReductionOf< T > >::compound_functor
,
bpp::CWiseMatching< R, ReductionOf< T > >::matching_functor
,
bpp::CWisePattern< R >::pattern_functor
,
bpp::ExtendedFloat
,
bpp::ExtendedFloatArrayWrapper< R, C >
,
bpp::ExtendedFloatCol< R, C, EigenType >
,
bpp::ExtendedFloatEigen< R, C, EigenType >
,
bpp::ExtendedFloatEigen< R, C, EigenType >::OwnedExtendedFloat
,
bpp::ExtendedFloatRow< R, C, EigenType >
ExponentialDiscreteRateDistribution() :
bpp::ExponentialDiscreteRateDistribution
ExtendedFloat() :
bpp::ExtendedFloat
ExtendedFloatArrayWrapper() :
bpp::ExtendedFloatArrayWrapper< R, C >
ExtendedFloatCol() :
bpp::ExtendedFloatCol< R, C, EigenType >
ExtendedFloatEigen() :
bpp::ExtendedFloatEigen< R, C, EigenType >
ExtendedFloatEigenBase() :
bpp::ExtendedFloatEigenBase< Derived >
ExtendedFloatNoAlias() :
bpp::ExtendedFloatNoAlias< DerivedEF >
ExtendedFloatRow() :
bpp::ExtendedFloatRow< R, C, EigenType >
ExtendedFloatVectorwiseOp() :
bpp::ExtendedFloatVectorwiseOp< DerivedEF, MatType, Direction >
ExtendedNewick() :
bpp::ExtendedNewick
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