- a -

• Array : bpp::ExtendedFloatArrayWrapper< R, C >

- b -

• Base : bpp::ExtendedFloatEigen< R, C, EigenType >

- d -

• DAClass : bpp::BackwardLikelihoodTree, bpp::ForwardLikelihoodTree
• Dep : bpp::CategoryFromDiscreteDistribution, bpp::EquilibriumFrequenciesFromModel, bpp::EquilibriumFrequenciesFromTransitionMatrix, bpp::ProbabilitiesFromDiscreteDistribution, bpp::ProbabilitiesFromMixedModel, bpp::ProbabilityFromDiscreteDistribution, bpp::ProbabilityFromMixedModel, bpp::TransitionFunctionFromModel, bpp::TransitionMatrixFromModel, bpp::TransitionMatrixFromTransitionMatrix, bpp::ValueFromConfiguredParameter
• DepF : bpp::Convert< R, F >
• DepT0 : bpp::MatrixProduct< R, T0, T1 >
• DepT1 : bpp::MatrixProduct< R, T0, T1 >
• DepType : bpp::NumericalDependencyTransform< T >, bpp::NumericalDependencyTransform< Transposed< T > >

- e -

• EdgeIterator : bpp::ProbabilisticRewardMapping, bpp::ProbabilisticSubstitutionMapping
• ExtendedFloatArray : bpp::ExtendedFloatEigen< R, C, EigenType >
• ExtendedFloatMatrix : bpp::ExtendedFloatEigen< R, C, EigenType >
• ExtType : bpp::ExtendedFloat, bpp::ExtendedFloatArrayWrapper< R, C >, bpp::ExtendedFloatCol< R, C, EigenType >, bpp::ExtendedFloatEigen< R, C, EigenType >, bpp::ExtendedFloatRow< R, C, EigenType >

- f -

• FloatType : bpp::ExtendedFloat

- i -

• IndicesType : bpp::SitePatterns

- l -

• lessEigenType : bpp::MultinomialFromTransitionModel

- m -

• mapTree : bpp::ProbabilisticRewardMapping, bpp::ProbabilisticSubstitutionMapping
• MatType : bpp::ExtendedFloatArrayWrapper< R, C >, bpp::ExtendedFloatEigen< R, C, EigenType >
• modelTree : bpp::AbstractSinglePhyloSubstitutionMapping

- n -

• Nested : Eigen::NumTraits< bpp::ExtendedFloat >
• NodeIterator : bpp::ProbabilisticRewardMapping, bpp::ProbabilisticSubstitutionMapping
• NonInteger : Eigen::NumTraits< bpp::ExtendedFloat >

- r -

• Real : Eigen::NumTraits< bpp::ExtendedFloat >
• RealScalar : bpp::ExtendedFloatEigenBase< Derived >
• RefMatType : bpp::ExtendedFloatEigen< R, C, EigenType >
• ReturnType : Eigen::ScalarBinaryOpTraits< bpp::ExtendedFloat, double, BinaryOp >, Eigen::ScalarBinaryOpTraits< double, bpp::ExtendedFloat, BinaryOp >

- s -

• Scalar : bpp::ExtendedFloatEigenBase< Derived >
• Self : bpp::BackwardHmmLikelihood_DF, bpp::CategoryFromDiscreteDistribution, bpp::CombineDeltaShifted< T >, bpp::ConfiguredDistribution, bpp::ConfiguredFrequencySet, bpp::ConfiguredModel, bpp::ConfiguredParameter, bpp::ConfiguredSimplex, bpp::ConfiguredTransitionMatrix, bpp::ConstantOne< T >, bpp::ConstantZero< T >, bpp::Convert< R, F >, bpp::CWiseAdd< R, T >, bpp::CWiseAdd< R, ReductionOf< T > >, bpp::CWiseAdd< R, std::tuple< T0, T1 > >, bpp::CWiseApply< R, T, F >, bpp::CWiseCompound< R, ReductionOf< T > >, bpp::CWiseConstantPow< T >, bpp::CWiseDiv< R, std::tuple< T0, T1 > >, bpp::CWiseExp< T >, bpp::CWiseFill< R, T >, bpp::CWiseInverse< T >, bpp::CWiseLog< T >, bpp::CWiseMatching< R, ReductionOf< T > >, bpp::CWiseMean< R, ReductionOf< T >, P >, bpp::CWiseMean< R, ReductionOf< T >, ReductionOf< P > >, bpp::CWiseMul< R, ReductionOf< T > >, bpp::CWiseMul< R, std::tuple< T0, T1 > >, bpp::CWiseNegate< T >, bpp::CWisePattern< R >, bpp::CWiseSub< R, std::tuple< T0, T1 > >, bpp::EquilibriumFrequenciesFromModel, bpp::EquilibriumFrequenciesFromTransitionMatrix, bpp::ExtendedFloatArrayWrapper< R, C >, bpp::ExtendedFloatEigen< R, C, EigenType >, bpp::ForwardHmmD2Likelihood_DF, bpp::ForwardHmmDLikelihood_DF, bpp::ForwardHmmLikelihood_DF, bpp::FrequenciesFromFrequencySet, bpp::FrequenciesFromSimplex, bpp::Identity< R >, bpp::LogSumExp< R, T0, T1 >, bpp::MatrixProduct< R, T0, T1 >, bpp::NumericConstant< T >, bpp::NumericMutable< T >, bpp::ProbabilitiesFromDiscreteDistribution, bpp::ProbabilitiesFromMixedModel, bpp::ProbabilityFromDiscreteDistribution, bpp::ProbabilityFromMixedModel, bpp::ScalarProduct< R, T0, T1 >, bpp::Sequence_DF, bpp::ShiftDelta< T >, bpp::ShiftParameter, bpp::SumOfLogarithms< F >, bpp::TransitionFunctionFromModel, bpp::TransitionMatrixFromModel, bpp::TransitionMatrixFromTransitionMatrix, bpp::ValueFromConfiguredParameter

- t -

• T : bpp::CategoryFromDiscreteDistribution, bpp::EquilibriumFrequenciesFromModel, bpp::EquilibriumFrequenciesFromTransitionMatrix, bpp::FrequenciesFromFrequencySet, bpp::FrequenciesFromSimplex, bpp::ProbabilitiesFromDiscreteDistribution, bpp::ProbabilitiesFromMixedModel, bpp::ProbabilityFromDiscreteDistribution, bpp::ProbabilityFromMixedModel, bpp::Sequence_DF, bpp::TransitionFunctionFromModel, bpp::TransitionMatrixFromModel, bpp::TransitionMatrixFromTransitionMatrix, bpp::ValueFromConfiguredParameter
• Target : bpp::ConfiguredDistribution, bpp::ConfiguredFrequencySet, bpp::ConfiguredModel, bpp::ConfiguredParameter, bpp::ConfiguredSimplex, bpp::ConfiguredTransitionMatrix

- v -

• VecType : bpp::ExtendedFloatCol< R, C, EigenType >, bpp::ExtendedFloatRow< R, C, EigenType >