- a -

• Array : bpp::ExtendedFloatArrayWrapper< R, C >

- b -

• Base : bpp::ExtendedFloatEigen< R, C, EigenType >

- d -

• DAClass : bpp::BackwardLikelihoodTree , bpp::ForwardLikelihoodTree
• Dep : bpp::CategoryFromDiscreteDistribution , bpp::EquilibriumFrequenciesFromModel , bpp::EquilibriumFrequenciesFromTransitionMatrix , bpp::ProbabilitiesFromDiscreteDistribution , bpp::ProbabilitiesFromMixedModel , bpp::ProbabilityFromDiscreteDistribution , bpp::ProbabilityFromMixedModel , bpp::TransitionFunctionFromModel , bpp::TransitionMatrixFromModel , bpp::TransitionMatrixFromTransitionMatrix , bpp::ValueFromConfiguredParameter
• DepF : bpp::Convert< R, F >
• DepT0 : bpp::MatrixProduct< R, T0, T1 >
• DepT1 : bpp::MatrixProduct< R, T0, T1 >
• DepType : bpp::NumericalDependencyTransform< T > , bpp::NumericalDependencyTransform< Transposed< T > >

- e -

• EdgeIterator : bpp::ProbabilisticRewardMapping , bpp::ProbabilisticSubstitutionMapping
• ExtendedFloatArray : bpp::ExtendedFloatEigen< R, C, EigenType >
• ExtendedFloatMatrix : bpp::ExtendedFloatEigen< R, C, EigenType >
• ExtType : bpp::ExtendedFloat , bpp::ExtendedFloatArrayWrapper< R, C > , bpp::ExtendedFloatCol< R, C, EigenType > , bpp::ExtendedFloatEigen< R, C, EigenType > , bpp::ExtendedFloatRow< R, C, EigenType >

- f -

• FloatType : bpp::ExtendedFloat

- i -

• IndicesType : bpp::SitePatterns

- l -

• lessEigenType : bpp::MultinomialFromTransitionModel

- m -

• mapTree : bpp::ProbabilisticRewardMapping , bpp::ProbabilisticSubstitutionMapping
• MatType : bpp::ExtendedFloatArrayWrapper< R, C > , bpp::ExtendedFloatEigen< R, C, EigenType >
• modelTree : bpp::AbstractSinglePhyloSubstitutionMapping

- n -

• Nested : Eigen::NumTraits< bpp::ExtendedFloat >
• NodeIterator : bpp::ProbabilisticRewardMapping , bpp::ProbabilisticSubstitutionMapping
• NonInteger : Eigen::NumTraits< bpp::ExtendedFloat >

- r -

• Real : Eigen::NumTraits< bpp::ExtendedFloat >
• RealScalar : bpp::ExtendedFloatEigenBase< Derived >
• RefMatType : bpp::ExtendedFloatEigen< R, C, EigenType >
• ReturnType : Eigen::ScalarBinaryOpTraits< bpp::ExtendedFloat, double, BinaryOp > , Eigen::ScalarBinaryOpTraits< double, bpp::ExtendedFloat, BinaryOp >

- s -

• Scalar : bpp::ExtendedFloatEigenBase< Derived >
• Self : bpp::BackwardHmmLikelihood_DF , bpp::CategoryFromDiscreteDistribution , bpp::CombineDeltaShifted< T > , bpp::ConfiguredDistribution , bpp::ConfiguredFrequencySet , bpp::ConfiguredModel , bpp::ConfiguredParameter , bpp::ConfiguredSimplex , bpp::ConfiguredTransitionMatrix , bpp::ConstantOne< T > , bpp::ConstantZero< T > , bpp::Convert< R, F > , bpp::CWiseAdd< R, T > , bpp::CWiseAdd< R, ReductionOf< T > > , bpp::CWiseAdd< R, std::tuple< T0, T1 > > , bpp::CWiseApply< R, T, F > , bpp::CWiseCompound< R, ReductionOf< T > > , bpp::CWiseConstantPow< T > , bpp::CWiseDiv< R, std::tuple< T0, T1 > > , bpp::CWiseExp< T > , bpp::CWiseFill< R, T > , bpp::CWiseInverse< T > , bpp::CWiseLog< T > , bpp::CWiseMatching< R, ReductionOf< T > > , bpp::CWiseMean< R, ReductionOf< T >, P > , bpp::CWiseMean< R, ReductionOf< T >, ReductionOf< P > > , bpp::CWiseMul< R, ReductionOf< T > > , bpp::CWiseMul< R, std::tuple< T0, T1 > > , bpp::CWiseNegate< T > , bpp::CWisePattern< R > , bpp::CWiseSub< R, std::tuple< T0, T1 > > , bpp::EquilibriumFrequenciesFromModel , bpp::EquilibriumFrequenciesFromTransitionMatrix , bpp::ExtendedFloatArrayWrapper< R, C > , bpp::ExtendedFloatEigen< R, C, EigenType > , bpp::ForwardHmmD2Likelihood_DF , bpp::ForwardHmmDLikelihood_DF , bpp::ForwardHmmLikelihood_DF , bpp::FrequenciesFromFrequencySet , bpp::FrequenciesFromSimplex , bpp::Identity< R > , bpp::LogSumExp< R, T0, T1 > , bpp::MatrixProduct< R, T0, T1 > , bpp::NumericConstant< T > , bpp::NumericMutable< T > , bpp::ProbabilitiesFromDiscreteDistribution , bpp::ProbabilitiesFromMixedModel , bpp::ProbabilityFromDiscreteDistribution , bpp::ProbabilityFromMixedModel , bpp::ScalarProduct< R, T0, T1 > , bpp::Sequence_DF , bpp::ShiftDelta< T > , bpp::ShiftParameter , bpp::SumOfLogarithms< F > , bpp::TransitionFunctionFromModel , bpp::TransitionMatrixFromModel , bpp::TransitionMatrixFromTransitionMatrix , bpp::ValueFromConfiguredParameter

- t -

• T : bpp::CategoryFromDiscreteDistribution , bpp::EquilibriumFrequenciesFromModel , bpp::EquilibriumFrequenciesFromTransitionMatrix , bpp::FrequenciesFromFrequencySet , bpp::FrequenciesFromSimplex , bpp::ProbabilitiesFromDiscreteDistribution , bpp::ProbabilitiesFromMixedModel , bpp::ProbabilityFromDiscreteDistribution , bpp::ProbabilityFromMixedModel , bpp::Sequence_DF , bpp::TransitionFunctionFromModel , bpp::TransitionMatrixFromModel , bpp::TransitionMatrixFromTransitionMatrix , bpp::ValueFromConfiguredParameter
• Target : bpp::ConfiguredDistribution , bpp::ConfiguredFrequencySet , bpp::ConfiguredModel , bpp::ConfiguredParameter , bpp::ConfiguredSimplex , bpp::ConfiguredTransitionMatrix

- v -

• VecType : bpp::ExtendedFloatCol< R, C, EigenType > , bpp::ExtendedFloatRow< R, C, EigenType >