bpp-phyl3
3.0.0
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- a -
a_ :
bpp::GTR
algorithm_ :
bpp::NNITopologySearch
ALL :
bpp::BppOFrequencySetFormat
,
bpp::BppOSubstitutionModelFormat
allowComments_ :
bpp::ExtendedNewick
,
bpp::Newick
allowConstant_ :
bpp::BppORateDistributionFormat
allowCovarions_ :
bpp::BppOSubstitutionModelFormat
allowed_product_without_normalization :
bpp::ExtendedFloat
allowGaps_ :
bpp::BppOSubstitutionModelFormat
allowMixed_ :
bpp::BppOSubstitutionModelFormat
allowSelf_ :
bpp::NaiveSubstitutionCount
alpha_ :
bpp::AbstractCodonDistanceSubstitutionModel
,
bpp::L95
,
bpp::RN95
,
bpp::RN95s
,
bpp::SitePatterns
alphabet_ :
bpp::AbstractFrequencySet
,
bpp::AbstractStateMap
,
bpp::AbstractTransitionModel
,
bpp::AbstractTreeLikelihoodData
,
bpp::AbstractTreeParsimonyScore
,
bpp::LegacyMarginalAncestralStateReconstruction
,
bpp::MarginalAncestralReconstruction
,
bpp::MutationPath
,
bpp::NonHomogeneousSequenceSimulator
,
bpp::SubstitutionModelSet
alphabetCode_ :
bpp::BppOFrequencySetFormat
,
bpp::BppOSubstitutionModelFormat
alphIndex_ :
bpp::AbstractReward
ancestralStates_ :
bpp::SiteSimulationResult
angle_ :
bpp::Cursor
annotation :
bpp::IODAG::Element
,
bpp::IOTree::Element
array1_ :
bpp::BranchLikelihood
array2_ :
bpp::BranchLikelihood
assign_ :
bpp::AbstractCodonClusterAASubstitutionModel
autoCorrTransMat_ :
bpp::AutoCorrelationSequenceEvolution
autonomous_ :
bpp::TreeDrawingListenerAdapter
AVERAGE :
bpp::HierarchicalClustering
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