bpp::AlignmentFilter2MafIterator Member List

This is the complete list of members for bpp::AlignmentFilter2MafIterator, including all inherited members.

AbstractFilterMafIterator(MafIterator *iterator)	bpp::AbstractFilterMafIterator	inline
AbstractFilterMafIterator(const AbstractFilterMafIterator &it)	bpp::AbstractFilterMafIterator	inlineprivate
AbstractMafIterator()	bpp::AbstractMafIterator	inline
addIterationListener(IterationListener *listener)	bpp::AbstractMafIterator	inlinevirtual
AlignmentFilter2MafIterator(MafIterator *iterator, const std::vector< std::string > &species, unsigned int windowSize, unsigned int step, unsigned int maxGap, unsigned int maxPos, bool keepTrashedBlocks, bool missingAsGap)	bpp::AlignmentFilter2MafIterator	inline
AlignmentFilter2MafIterator(MafIterator *iterator, const std::vector< std::string > &species, unsigned int windowSize, unsigned int step, double maxPropGap, unsigned int maxPos, bool keepTrashedBlocks, bool missingAsGap)	bpp::AlignmentFilter2MafIterator	inline
analyseCurrentBlock_()	bpp::AlignmentFilter2MafIterator	privatevirtual
blockBuffer_	bpp::AlignmentFilter2MafIterator	private
currentBlock_	bpp::AbstractFilterMafIterator	protected
fireIterationMoveSignal_(const MafBlock &currentBlock)	bpp::AbstractMafIterator	protectedvirtual
fireIterationStartSignal_()	bpp::AbstractMafIterator	protectedvirtual
fireIterationStopSignal_()	bpp::AbstractMafIterator	protectedvirtual
isVerbose() const	bpp::AbstractMafIterator	inlinevirtual
iterationListeners_	bpp::AbstractMafIterator	protected
iterator_	bpp::AbstractFilterMafIterator	protected
keepTrashedBlocks_	bpp::AlignmentFilter2MafIterator	private
logstream_	bpp::AbstractFilterMafIterator	protected
maxGap_	bpp::AlignmentFilter2MafIterator	private
maxPos_	bpp::AlignmentFilter2MafIterator	private
maxPropGap_	bpp::AlignmentFilter2MafIterator	private
missingAsGap_	bpp::AlignmentFilter2MafIterator	private
nextBlock()	bpp::AbstractMafIterator	inlinevirtual
nextRemovedBlock()	bpp::AlignmentFilter2MafIterator	inlinevirtual
operator=(const AbstractFilterMafIterator &it)	bpp::AbstractFilterMafIterator	inlineprivate
relative_	bpp::AlignmentFilter2MafIterator	private
setLogStream(std::shared_ptr< OutputStream > logstream)	bpp::AbstractFilterMafIterator	inline
setVerbose(bool yn)	bpp::AbstractMafIterator	inlinevirtual
species_	bpp::AlignmentFilter2MafIterator	private
started_	bpp::AbstractMafIterator	protected
step_	bpp::AlignmentFilter2MafIterator	private
trashBuffer_	bpp::AlignmentFilter2MafIterator	private
verbose_	bpp::AbstractMafIterator	protected
window_	bpp::AlignmentFilter2MafIterator	private
windowSize_	bpp::AlignmentFilter2MafIterator	private
~AbstractMafIterator()	bpp::AbstractMafIterator	inlinevirtual
~MafIterator()	bpp::MafIterator	inlinevirtual
~MafTrashIterator()	bpp::MafTrashIterator	inlinevirtual