bpp::MafIterator Class Reference

Interface to loop over maf alignment blocks. More...

#include <Bpp/Seq/Io/Maf/MafIterator.h>

Inheritance diagram for bpp::MafIterator:

Public Member Functions
virtual	~MafIterator ()
virtual MafBlock *	nextBlock ()=0
	Get the next available alignment block. More...
virtual bool	isVerbose () const =0
virtual void	setVerbose (bool yn)=0
virtual void	addIterationListener (IterationListener *listener)=0

Detailed Description

Interface to loop over maf alignment blocks.

Definition at line 58 of file MafIterator.h.

Constructor & Destructor Documentation

~MafIterator()

virtual bpp::MafIterator::~MafIterator ( )

inlinevirtual

Definition at line 61 of file MafIterator.h.

Member Function Documentation

addIterationListener()

virtual void bpp::MafIterator::addIterationListener ( IterationListener *  listener )

pure virtual

Implemented in bpp::AbstractMafIterator.

isVerbose()

virtual bool bpp::MafIterator::isVerbose ( ) const

pure virtual

Implemented in bpp::AbstractMafIterator.

nextBlock()

virtual MafBlock* bpp::MafIterator::nextBlock ( )

pure virtual

Get the next available alignment block.

Returns

A maf alignment block, or a null pointer if no more block is available.

Implemented in bpp::AbstractMafIterator.

Referenced by bpp::BlockLengthMafIterator::analyseCurrentBlock_(), bpp::BlockSizeMafIterator::analyseCurrentBlock_(), bpp::MafIteratorSynchronizer::analyseCurrentBlock_(), bpp::MsmcOutputMafIterator::analyseCurrentBlock_(), bpp::OrderFilterMafIterator::analyseCurrentBlock_(), bpp::OutputMafIterator::analyseCurrentBlock_(), bpp::PlinkOutputMafIterator::analyseCurrentBlock_(), bpp::SequenceStatisticsMafIterator::analyseCurrentBlock_(), bpp::TableOutputMafIterator::analyseCurrentBlock_(), bpp::VcfOutputMafIterator::analyseCurrentBlock_(), bpp::BlockMergerMafIterator::BlockMergerMafIterator(), and bpp::ConcatenateMafIterator::ConcatenateMafIterator().

setVerbose()

virtual void bpp::MafIterator::setVerbose ( bool  yn )

pure virtual

Implemented in bpp::AbstractMafIterator.

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The documentation for this class was generated from the following file:

• Bpp/Seq/Io/Maf/MafIterator.h