bpp-seq-omics  2.4.1
bpp::BlockMergerMafIterator Member List

This is the complete list of members for bpp::BlockMergerMafIterator, including all inherited members.

AbstractFilterMafIterator(MafIterator *iterator)bpp::AbstractFilterMafIteratorinline
AbstractFilterMafIterator(const AbstractFilterMafIterator &it)bpp::AbstractFilterMafIteratorinlineprivate
AbstractMafIterator()bpp::AbstractMafIteratorinline
addIterationListener(IterationListener *listener)bpp::AbstractMafIteratorinlinevirtual
analyseCurrentBlock_()bpp::BlockMergerMafIteratorprivatevirtual
BlockMergerMafIterator(MafIterator *iterator, const std::vector< std::string > &species, unsigned int maxDist=0, bool renameChimericChromosomes=false)bpp::BlockMergerMafIteratorinline
BlockMergerMafIterator(const BlockMergerMafIterator &iterator)bpp::BlockMergerMafIteratorinlineprivate
chimericChromosomeCounts_bpp::BlockMergerMafIteratorprivate
currentBlock_bpp::AbstractFilterMafIteratorprotected
fireIterationMoveSignal_(const MafBlock &currentBlock)bpp::AbstractMafIteratorprotectedvirtual
fireIterationStartSignal_()bpp::AbstractMafIteratorprotectedvirtual
fireIterationStopSignal_()bpp::AbstractMafIteratorprotectedvirtual
ignoreChromosome(const std::string &chr)bpp::BlockMergerMafIteratorinline
ignoreChrs_bpp::BlockMergerMafIteratorprivate
incomingBlock_bpp::BlockMergerMafIteratorprivate
isVerbose() constbpp::AbstractMafIteratorinlinevirtual
iterationListeners_bpp::AbstractMafIteratorprotected
iterator_bpp::AbstractFilterMafIteratorprotected
logstream_bpp::AbstractFilterMafIteratorprotected
maxDist_bpp::BlockMergerMafIteratorprivate
nextBlock()bpp::AbstractMafIteratorinlinevirtual
operator=(const BlockMergerMafIterator &iterator)bpp::BlockMergerMafIteratorinlineprivate
renameChimericChromosomes_bpp::BlockMergerMafIteratorprivate
setLogStream(std::shared_ptr< OutputStream > logstream)bpp::AbstractFilterMafIteratorinline
setVerbose(bool yn)bpp::AbstractMafIteratorinlinevirtual
species_bpp::BlockMergerMafIteratorprivate
started_bpp::AbstractMafIteratorprotected
verbose_bpp::AbstractMafIteratorprotected
~AbstractMafIterator()bpp::AbstractMafIteratorinlinevirtual
~MafIterator()bpp::MafIteratorinlinevirtual