bpp::FeatureReader Class Reference

Interface for feature readers. More...

#include <Bpp/Seq/Feature/FeatureReader.h>

Inheritance diagram for bpp::FeatureReader:

Public Member Functions
	FeatureReader ()
virtual	~FeatureReader ()
virtual bool	hasMoreFeature () const =0
virtual const BasicSequenceFeature	nextFeature ()=0
virtual void	getAllFeatures (SequenceFeatureSet &features)=0
virtual void	getFeaturesOfType (const std::string &type, SequenceFeatureSet &features)=0
virtual void	getFeaturesOfSequence (const std::string &seqId, SequenceFeatureSet &features)=0

Detailed Description

Interface for feature readers.

Author

Julien Dutheil, Sylvain Gaillard

Definition at line 59 of file FeatureReader.h.

Constructor & Destructor Documentation

FeatureReader()

bpp::FeatureReader::FeatureReader ( )

inline

Definition at line 62 of file FeatureReader.h.

~FeatureReader()

virtual bpp::FeatureReader::~FeatureReader ( )

inlinevirtual

Definition at line 63 of file FeatureReader.h.

Member Function Documentation

getAllFeatures()

virtual void bpp::FeatureReader::getAllFeatures ( SequenceFeatureSet &  features )

pure virtual

Implemented in bpp::GtfFeatureReader, bpp::GffFeatureReader, and bpp::BedGraphFeatureReader.

getFeaturesOfSequence()

virtual void bpp::FeatureReader::getFeaturesOfSequence ( const std::string &  seqId, SequenceFeatureSet &  features  )

pure virtual

Implemented in bpp::GtfFeatureReader, bpp::GffFeatureReader, and bpp::BedGraphFeatureReader.

getFeaturesOfType()

virtual void bpp::FeatureReader::getFeaturesOfType ( const std::string &  type, SequenceFeatureSet &  features  )

pure virtual

Implemented in bpp::GtfFeatureReader, bpp::GffFeatureReader, and bpp::BedGraphFeatureReader.

hasMoreFeature()

virtual bool bpp::FeatureReader::hasMoreFeature ( ) const

pure virtual

Implemented in bpp::GtfFeatureReader, bpp::GffFeatureReader, and bpp::BedGraphFeatureReader.

nextFeature()

virtual const BasicSequenceFeature bpp::FeatureReader::nextFeature ( )

pure virtual

Implemented in bpp::GtfFeatureReader, bpp::GffFeatureReader, and bpp::BedGraphFeatureReader.

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The documentation for this class was generated from the following file:

• Bpp/Seq/Feature/FeatureReader.h