bpp::OrderFilterMafIterator Member List

This is the complete list of members for bpp::OrderFilterMafIterator, including all inherited members.

AbstractFilterMafIterator(MafIterator *iterator)	bpp::AbstractFilterMafIterator	inline
AbstractFilterMafIterator(const AbstractFilterMafIterator &it)	bpp::AbstractFilterMafIterator	inlineprivate
AbstractMafIterator()	bpp::AbstractMafIterator	inline
addIterationListener(IterationListener *listener)	bpp::AbstractMafIterator	inlinevirtual
analyseCurrentBlock_()	bpp::OrderFilterMafIterator	inlinevirtual
currentBlock_	bpp::AbstractFilterMafIterator	protected
currentChr_	bpp::OrderFilterMafIterator	private
fireIterationMoveSignal_(const MafBlock &currentBlock)	bpp::AbstractMafIterator	protectedvirtual
fireIterationStartSignal_()	bpp::AbstractMafIterator	protectedvirtual
fireIterationStopSignal_()	bpp::AbstractMafIterator	protectedvirtual
isVerbose() const	bpp::AbstractMafIterator	inlinevirtual
iterationListeners_	bpp::AbstractMafIterator	protected
iterator_	bpp::AbstractFilterMafIterator	protected
logstream_	bpp::AbstractFilterMafIterator	protected
nextBlock()	bpp::AbstractMafIterator	inlinevirtual
operator=(const OrderFilterMafIterator &iterator)	bpp::OrderFilterMafIterator	inlineprivate
OrderFilterMafIterator(MafIterator *iterator, const std::string &reference, bool unsortedBlockDiscarded=true, bool unsortedBlockThrowsException=false, bool overlappingBlockDiscarded=true, bool overlappingBlockThrowsException=false)	bpp::OrderFilterMafIterator	inline
OrderFilterMafIterator(const OrderFilterMafIterator &iterator)	bpp::OrderFilterMafIterator	inlineprivate
overlappingBlockDiscarded_	bpp::OrderFilterMafIterator	private
overlappingBlockThrowsException_	bpp::OrderFilterMafIterator	private
parseBlock_(const MafBlock &block)	bpp::OrderFilterMafIterator	private
previousBlockStart_	bpp::OrderFilterMafIterator	private
previousBlockStop_	bpp::OrderFilterMafIterator	private
refSpecies_	bpp::OrderFilterMafIterator	private
setLogStream(std::shared_ptr< OutputStream > logstream)	bpp::AbstractFilterMafIterator	inline
setVerbose(bool yn)	bpp::AbstractMafIterator	inlinevirtual
started_	bpp::AbstractMafIterator	protected
unsortedBlockDiscarded_	bpp::OrderFilterMafIterator	private
unsortedBlockThrowsException_	bpp::OrderFilterMafIterator	private
verbose_	bpp::AbstractMafIterator	protected
~AbstractMafIterator()	bpp::AbstractMafIterator	inlinevirtual
~MafIterator()	bpp::MafIterator	inlinevirtual