bpp::OutputAlignmentMafIterator Member List

This is the complete list of members for bpp::OutputAlignmentMafIterator, including all inherited members.

AbstractFilterMafIterator(MafIterator *iterator)	bpp::AbstractFilterMafIterator	inline
AbstractFilterMafIterator(const AbstractFilterMafIterator &it)	bpp::AbstractFilterMafIterator	inlineprivate
AbstractMafIterator()	bpp::AbstractMafIterator	inline
addIterationListener(IterationListener *listener)	bpp::AbstractMafIterator	inlinevirtual
addLDHatHeader_	bpp::OutputAlignmentMafIterator	private
analyseCurrentBlock_()	bpp::OutputAlignmentMafIterator	privatevirtual
currentBlock_	bpp::AbstractFilterMafIterator	protected
currentBlockIndex_	bpp::OutputAlignmentMafIterator	private
file_	bpp::OutputAlignmentMafIterator	private
fireIterationMoveSignal_(const MafBlock &currentBlock)	bpp::AbstractMafIterator	protectedvirtual
fireIterationStartSignal_()	bpp::AbstractMafIterator	protectedvirtual
fireIterationStopSignal_()	bpp::AbstractMafIterator	protectedvirtual
isVerbose() const	bpp::AbstractMafIterator	inlinevirtual
iterationListeners_	bpp::AbstractMafIterator	protected
iterator_	bpp::AbstractFilterMafIterator	protected
logstream_	bpp::AbstractFilterMafIterator	protected
mask_	bpp::OutputAlignmentMafIterator	private
nextBlock()	bpp::AbstractMafIterator	inlinevirtual
operator=(const OutputAlignmentMafIterator &iterator)	bpp::OutputAlignmentMafIterator	inlineprivate
output_	bpp::OutputAlignmentMafIterator	private
OutputAlignmentMafIterator(MafIterator *iterator, std::ostream *out, OAlignment *writer, bool mask=true, bool outputCoordinates=true, bool addLDHatHeader=false, const std::string &reference="")	bpp::OutputAlignmentMafIterator	inline
OutputAlignmentMafIterator(MafIterator *iterator, const std::string &file, OAlignment *writer, bool mask=true, bool outputCoordinates=true, bool addLDHatHeader=false, const std::string &reference="")	bpp::OutputAlignmentMafIterator	inline
OutputAlignmentMafIterator(const OutputAlignmentMafIterator &iterator)	bpp::OutputAlignmentMafIterator	inlineprivate
outputCoordinates_	bpp::OutputAlignmentMafIterator	private
refSpecies_	bpp::OutputAlignmentMafIterator	private
setLogStream(std::shared_ptr< OutputStream > logstream)	bpp::AbstractFilterMafIterator	inline
setVerbose(bool yn)	bpp::AbstractMafIterator	inlinevirtual
started_	bpp::AbstractMafIterator	protected
verbose_	bpp::AbstractMafIterator	protected
writeBlock(std::ostream &out, const MafBlock &block) const	bpp::OutputAlignmentMafIterator	private
writer_	bpp::OutputAlignmentMafIterator	private
~AbstractMafIterator()	bpp::AbstractMafIterator	inlinevirtual
~MafIterator()	bpp::MafIterator	inlinevirtual
~OutputAlignmentMafIterator()	bpp::OutputAlignmentMafIterator	inline