bpp::VcfOutputMafIterator Member List

This is the complete list of members for bpp::VcfOutputMafIterator, including all inherited members.

AbstractFilterMafIterator(MafIterator *iterator)	bpp::AbstractFilterMafIterator	inline
AbstractFilterMafIterator(const AbstractFilterMafIterator &it)	bpp::AbstractFilterMafIterator	inlineprivate
AbstractMafIterator()	bpp::AbstractMafIterator	inline
addIterationListener(IterationListener *listener)	bpp::AbstractMafIterator	inlinevirtual
analyseCurrentBlock_()	bpp::VcfOutputMafIterator	inlinevirtual
currentBlock_	bpp::AbstractFilterMafIterator	protected
fireIterationMoveSignal_(const MafBlock &currentBlock)	bpp::AbstractMafIterator	protectedvirtual
fireIterationStartSignal_()	bpp::AbstractMafIterator	protectedvirtual
fireIterationStopSignal_()	bpp::AbstractMafIterator	protectedvirtual
generateDiploids_	bpp::VcfOutputMafIterator	private
genotypes_	bpp::VcfOutputMafIterator	private
isVerbose() const	bpp::AbstractMafIterator	inlinevirtual
iterationListeners_	bpp::AbstractMafIterator	protected
iterator_	bpp::AbstractFilterMafIterator	protected
logstream_	bpp::AbstractFilterMafIterator	protected
nextBlock()	bpp::AbstractMafIterator	inlinevirtual
operator=(const VcfOutputMafIterator &iterator)	bpp::VcfOutputMafIterator	inlineprivate
output_	bpp::VcfOutputMafIterator	private
outputAll_	bpp::VcfOutputMafIterator	private
refSpecies_	bpp::VcfOutputMafIterator	private
setLogStream(std::shared_ptr< OutputStream > logstream)	bpp::AbstractFilterMafIterator	inline
setVerbose(bool yn)	bpp::AbstractMafIterator	inlinevirtual
started_	bpp::AbstractMafIterator	protected
VcfOutputMafIterator(MafIterator *iterator, std::ostream *out, const std::string &reference, const std::vector< std::string > &genotypes, bool outputAll=false, bool generateDiploids=false)	bpp::VcfOutputMafIterator	inline
VcfOutputMafIterator(MafIterator *iterator, std::ostream *out, const std::string &reference, const std::vector< std::vector< std::string > > &genotypes, bool outputAll=false)	bpp::VcfOutputMafIterator	inline
VcfOutputMafIterator(const VcfOutputMafIterator &iterator)	bpp::VcfOutputMafIterator	inlineprivate
verbose_	bpp::AbstractMafIterator	protected
writeBlock_(std::ostream &out, const MafBlock &block) const	bpp::VcfOutputMafIterator	private
writeHeader_(std::ostream &out) const	bpp::VcfOutputMafIterator	private
~AbstractMafIterator()	bpp::AbstractMafIterator	inlinevirtual
~MafIterator()	bpp::MafIterator	inlinevirtual