Here is a list of all class members with links to the classes they belong to:

- s -

• score_ : bpp::BasicSequenceFeature , bpp::MafBlock
• secondaryIterator_ : bpp::MafIteratorSynchronizer
• sep_ : bpp::CsvStatisticsOutputIterationListener
• SeqRange() : bpp::SeqRange
• seqStream_ : bpp::SequenceStreamToMafIterator
• SequenceDiversityMafStatistics() : bpp::SequenceDiversityMafStatistics
• SequenceFeatureSet() : bpp::SequenceFeatureSet
• SequenceFilterMafIterator() : bpp::SequenceFilterMafIterator
• sequenceId_ : bpp::BasicSequenceFeature
• SequenceLDhotOutputMafIterator() : bpp::SequenceLDhotOutputMafIterator
• SequenceLengthMafStatistics() : bpp::SequenceLengthMafStatistics
• SequenceStatisticsMafIterator() : bpp::SequenceStatisticsMafIterator
• SequenceStreamToMafIterator() : bpp::SequenceStreamToMafIterator
• setAttribute() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• setChromosome() : bpp::MafSequence
• setId() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• setLogStream() : bpp::AbstractFilterMafIterator
• setName() : bpp::MafSequence
• setPass() : bpp::MafBlock
• setProperty() : bpp::MafBlock
• setScore() : bpp::BasicSequenceFeature , bpp::MafBlock , bpp::SequenceFeature
• setSequenceId() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• setSource() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• setSpecies() : bpp::MafSequence
• setSrcSize() : bpp::MafSequence
• setStart() : bpp::MafSequence
• setStrand() : bpp::MafSequence
• setType() : bpp::BasicSequenceFeature , bpp::SequenceFeature
• setValue() : bpp::MafStatisticsResult , bpp::SimpleMafStatisticsResult
• setVerbose() : bpp::AbstractMafIterator , bpp::MafIterator
• SimpleMafStatisticsResult() : bpp::SimpleMafStatisticsResult
• SiteFrequencySpectrumMafStatistics() : bpp::SiteFrequencySpectrumMafStatistics
• SiteMafStatistics() : bpp::SiteMafStatistics
• size() : bpp::SequenceFeature
• size_ : bpp::MafSequence
• source_ : bpp::BasicSequenceFeature
• species1_ : bpp::PairwiseDivergenceMafStatistics
• species2_ : bpp::PairwiseDivergenceMafStatistics
• species_ : bpp::AbstractSpeciesMultipleSelectionMafStatistics , bpp::AbstractSpeciesSelectionMafStatistics , bpp::AlignmentFilter2MafIterator , bpp::AlignmentFilterMafIterator , bpp::BlockMergerMafIterator , bpp::CoordinatesOutputMafIterator , bpp::EntropyFilterMafIterator , bpp::FullGapFilterMafIterator , bpp::MafSequence , bpp::MaskFilterMafIterator , bpp::MsmcOutputMafIterator , bpp::OrphanSequenceFilterMafIterator , bpp::PlinkOutputMafIterator , bpp::QualityFilterMafIterator , bpp::SequenceFilterMafIterator , bpp::SequenceLengthMafStatistics , bpp::TableOutputMafIterator
• splitNameIntoSpeciesAndChromosome() : bpp::MafSequence
• srcSize_ : bpp::MafSequence
• start() : bpp::MafSequence
• started_ : bpp::AbstractMafIterator
• statistics_ : bpp::SequenceStatisticsMafIterator
• statsIterator_ : bpp::AbstractStatisticsOutputIterationListener
• step_ : bpp::AlignmentFilter2MafIterator , bpp::AlignmentFilterMafIterator , bpp::EntropyFilterMafIterator , bpp::MaskFilterMafIterator , bpp::QualityFilterMafIterator
• stop() : bpp::MafSequence
• strand_ : bpp::MafSequence , bpp::SeqRange
• stream_ : bpp::MafParser , bpp::SequenceStreamToMafIterator
• strict_ : bpp::OrphanSequenceFilterMafIterator , bpp::SequenceFilterMafIterator
• subSequence() : bpp::MafSequence
• suffix_ : bpp::AbstractSpeciesSelectionMafStatistics