OSequence.h

Go to the documentation of this file.

// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_SEQ_IO_OSEQUENCE_H
#define BPP_SEQ_IO_OSEQUENCE_H
 
#include <Bpp/Exceptions.h>
 
#include "../Container/SequenceContainer.h"
#include "../Container/SiteContainer.h"
#include "IoSequence.h"
 
namespace bpp
{
class OSequence :
  public virtual IOSequence
{
public:
  OSequence() {}
  virtual ~OSequence() {}
 
public:
  virtual void writeSequences(std::ostream& output, const SequenceContainerInterface& sc) const = 0;
 
  virtual void writeSequences(const std::string& path, const SequenceContainerInterface& sc, bool overwrite) const = 0;
};
 
 
class OAlignment :
  public virtual IOSequence
{
public:
  OAlignment() {}
  virtual ~OAlignment() {}
 
public:
  virtual void writeAlignment(std::ostream& output, const SiteContainerInterface& sc) const = 0;
 
  virtual void writeAlignment(const std::string& path, const SiteContainerInterface& sc, bool overwrite) const = 0;
};
 
 
class OProbabilisticSequence :
  public virtual IOProbabilisticSequence
{
public:
  OProbabilisticSequence() {}
  virtual ~OProbabilisticSequence() {}
 
public:
  virtual void writeSequences(std::ostream& output, const ProbabilisticSequenceContainerInterface& sc) const = 0;
 
  virtual void writeSequences(const std::string& path, const ProbabilisticSequenceContainerInterface& sc, bool overwrite) const = 0;
};
 
class OProbabilisticAlignment :
  public virtual IOProbabilisticSequence
{
public:
  OProbabilisticAlignment() {}
  virtual ~OProbabilisticAlignment() {}
 
public:
  virtual void writeAlignment(std::ostream& output, const ProbabilisticSiteContainerInterface& sc) const = 0;
 
  virtual void writeAlignment(const std::string& path, const ProbabilisticSiteContainerInterface& sc, bool overwrite) const = 0;
};
} // end of namespace bpp.
#endif // BPP_SEQ_IO_OSEQUENCE_H