ProbabilisticSequence.cpp

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#include "ProbabilisticSequence.h" // class's header file
 
using namespace bpp;
 
// From the STL:
#include <iostream>
 
using namespace std;
 
/******************************************************************************/
 
void ProbabilisticSequence::setToSizeR(size_t newSize)
{
  // Size verification
  size_t seqSize = size();
  if (newSize == seqSize)
    return;
 
  if (newSize < seqSize)
  {
    deleteElements(newSize, seqSize - newSize);
    return;
  }
 
  // Add gaps up to specified size
  auto gap = std::vector<double>(alphabet().getSize(), 0);
 
  for (size_t i = 0; i < (size_t)(newSize - seqSize); i++)
  {
    addElement(gap);
  }
}
 
/******************************************************************************/
 
void ProbabilisticSequence::setToSizeL(size_t newSize)
{
  // Size verification
  size_t seqSize = size();
  if (newSize == seqSize)
    return;
 
  if (newSize < seqSize)
  {
    deleteElements(0, seqSize - newSize);
    return;
  }
 
  // Add gaps up to specified size
  auto gap = std::vector<double>(alphabet().getSize(), 0);
 
  for (size_t i = 0; i < (size_t)(newSize - seqSize); i++)
  {
    addElement(0, gap);
  }
}