bpp::BppOSequenceStreamReaderFormat Class Reference

Sequence I/O in BppO format. More...

#include <Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h>

Inheritance diagram for bpp::BppOSequenceStreamReaderFormat:

Collaboration diagram for bpp::BppOSequenceStreamReaderFormat:

Public Member Functions
	BppOSequenceStreamReaderFormat ()
virtual	~BppOSequenceStreamReaderFormat ()
const std::string	getFormatName () const
const std::string	getFormatDescription () const
const std::string	getDataType () const
std::unique_ptr< ISequenceStream >	read (const std::string &description)
	Read a ISequenceStream object from a string. More...
virtual const std::map< std::string, std::string > &	getUnparsedArguments () const

Private Attributes
std::map< std::string, std::string >	unparsedArguments_

Detailed Description

Sequence I/O in BppO format.

Creates a new ISequenceStream object according to distribution description syntax (see the Bio++ Program Suite manual for a detailed description of this syntax).

Definition at line 21 of file BppOSequenceStreamReaderFormat.h.

Constructor & Destructor Documentation

BppOSequenceStreamReaderFormat()

bpp::BppOSequenceStreamReaderFormat::BppOSequenceStreamReaderFormat ( )

inline

Definition at line 28 of file BppOSequenceStreamReaderFormat.h.

~BppOSequenceStreamReaderFormat()

virtual bpp::BppOSequenceStreamReaderFormat::~BppOSequenceStreamReaderFormat ( )

inlinevirtual

Definition at line 30 of file BppOSequenceStreamReaderFormat.h.

Member Function Documentation

getDataType()

const std::string bpp::BppOSequenceStreamReaderFormat::getDataType ( ) const

inlinevirtual

Implements bpp::IOFormat.

Definition at line 37 of file BppOSequenceStreamReaderFormat.h.

getFormatDescription()

const std::string bpp::BppOSequenceStreamReaderFormat::getFormatDescription ( ) const

inlinevirtual

Implements bpp::IOFormat.

Definition at line 35 of file BppOSequenceStreamReaderFormat.h.

getFormatName()

const std::string bpp::BppOSequenceStreamReaderFormat::getFormatName ( ) const

inlinevirtual

Implements bpp::IOFormat.

Definition at line 33 of file BppOSequenceStreamReaderFormat.h.

getUnparsedArguments()

virtual const std::map<std::string, std::string>& bpp::BppOSequenceStreamReaderFormat::getUnparsedArguments ( ) const

inlinevirtual

Returns

The arguments and their unparsed values from the last call of the read function, if there are any.

Definition at line 51 of file BppOSequenceStreamReaderFormat.h.

References unparsedArguments_.

read()

unique_ptr< ISequenceStream > BppOSequenceStreamReaderFormat::read

(

const std::string &

description

)

Read a ISequenceStream object from a string.

Parameters

description

A string describing the reader in the keyval syntax.

Returns

A new ISequenceStream object according to options specified.

Exceptions

Exception

if an error occurred.

Definition at line 15 of file BppOSequenceStreamReaderFormat.cpp.

References bpp::ApplicationTools::getBooleanParameter(), and bpp::KeyvalTools::parseProcedure().

Member Data Documentation

unparsedArguments_

std::map<std::string, std::string> bpp::BppOSequenceStreamReaderFormat::unparsedArguments_

private

Definition at line 25 of file BppOSequenceStreamReaderFormat.h.

Referenced by getUnparsedArguments().

---

The documentation for this class was generated from the following files:

• Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h
• Bpp/Seq/Io/BppOSequenceStreamReaderFormat.cpp