bpp::OSequenceStream Class Reference

The OSequenceStream interface. More...

#include <Bpp/Seq/Io/OSequenceStream.h>

Inheritance diagram for bpp::OSequenceStream:

Collaboration diagram for bpp::OSequenceStream:

Public Member Functions
	OSequenceStream ()
virtual	~OSequenceStream ()
virtual void	writeSequence (std::ostream &output, const Sequence &seq) const =0
	Read sequence from stream. More...
virtual const std::string	getDataType () const=0
virtual const std::string	getFormatName () const=0
virtual const std::string	getFormatDescription () const=0

Detailed Description

The OSequenceStream interface.

Interface for streaming sequences output.

Author

Sylvain Gaillard

Definition at line 59 of file OSequenceStream.h.

Constructor & Destructor Documentation

OSequenceStream()

bpp::OSequenceStream::OSequenceStream ( )

inline

Definition at line 62 of file OSequenceStream.h.

~OSequenceStream()

virtual bpp::OSequenceStream::~OSequenceStream ( )

inlinevirtual

Definition at line 63 of file OSequenceStream.h.

Member Function Documentation

writeSequence()

virtual void bpp::OSequenceStream::writeSequence ( std::ostream &  output, const Sequence &  seq  ) const

pure virtual

Read sequence from stream.

Read one sequence from a stream.

Parameters

output	The stream where write.
seq	The sequence to write.

Exceptions

Exception

IOExecption.

Implemented in bpp::Fasta.

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The documentation for this class was generated from the following file:

• Bpp/Seq/Io/OSequenceStream.h