bpp::SequencePositionIterator Class Reference

Loop over a Sequence. More...

#include <Bpp/Seq/SequencePositionIterators.h>

Inheritance diagram for bpp::SequencePositionIterator:

Public Member Functions
	SequencePositionIterator ()
virtual	~SequencePositionIterator ()
virtual unsigned int	getPosition () const =0
	Get the actual position of the iterator in the Sequence. More...
virtual void	setPosition (unsigned int pos)=0
	Set the position of the iterator. More...
virtual int	getValue () const =0
	Get the numerical value of the Sequence at current position. More...
virtual std::string	getChar () const =0
	Get the textual value of the Sequence at current position. More...
virtual bool	operator== (const SequencePositionIterator &it) const =0
virtual bool	operator!= (const SequencePositionIterator &it) const =0
virtual SequencePositionIterator &	operator+= (int i)=0
virtual SequencePositionIterator &	operator-= (int i)=0
virtual SequencePositionIterator &	operator++ ()=0
virtual bool	hasMorePositions () const =0
	Tells if there is more positions in the Sequence. More...
virtual const Sequence &	getSequence () const =0
	Get the Sequence on which the iterator loops. More...

Detailed Description

Loop over a Sequence.

This is the SequencePositionIterator interface.

Author

Sylvain Gaillard

Definition at line 23 of file SequencePositionIterators.h.

Constructor & Destructor Documentation

SequencePositionIterator()

bpp::SequencePositionIterator::SequencePositionIterator ( )

inline

Definition at line 26 of file SequencePositionIterators.h.

~SequencePositionIterator()

virtual bpp::SequencePositionIterator::~SequencePositionIterator ( )

inlinevirtual

Definition at line 27 of file SequencePositionIterators.h.

Member Function Documentation

getChar()

virtual std::string bpp::SequencePositionIterator::getChar ( ) const

pure virtual

Get the textual value of the Sequence at current position.

Implemented in bpp::AbstractSequencePositionIterator.

getPosition()

virtual unsigned int bpp::SequencePositionIterator::getPosition ( ) const

pure virtual

Get the actual position of the iterator in the Sequence.

Implemented in bpp::AbstractSequencePositionIterator.

Referenced by bpp::AbstractSequencePositionIterator::operator!=(), and bpp::AbstractSequencePositionIterator::operator==().

getSequence()

virtual const Sequence& bpp::SequencePositionIterator::getSequence ( ) const

pure virtual

Get the Sequence on which the iterator loops.

Returns

A reference toward the Sequence object.

Implemented in bpp::AbstractSequencePositionIterator.

getValue()

virtual int bpp::SequencePositionIterator::getValue ( ) const

pure virtual

Get the numerical value of the Sequence at current position.

Implemented in bpp::AbstractSequencePositionIterator.

hasMorePositions()

virtual bool bpp::SequencePositionIterator::hasMorePositions ( ) const

pure virtual

Tells if there is more positions in the Sequence.

Returns

true if there is more positions in the Sequence

Implemented in bpp::SimpleSequencePositionIterator.

operator!=()

virtual bool bpp::SequencePositionIterator::operator!= ( const SequencePositionIterator &  it ) const

pure virtual

Implemented in bpp::AbstractSequencePositionIterator.

operator++()

virtual SequencePositionIterator& bpp::SequencePositionIterator::operator++ ( )

pure virtual

Implemented in bpp::SimpleSequencePositionIterator.

operator+=()

virtual SequencePositionIterator& bpp::SequencePositionIterator::operator+= ( int  i )

pure virtual

Implemented in bpp::SimpleSequencePositionIterator.

operator-=()

virtual SequencePositionIterator& bpp::SequencePositionIterator::operator-= ( int  i )

pure virtual

Implemented in bpp::SimpleSequencePositionIterator.

operator==()

virtual bool bpp::SequencePositionIterator::operator== ( const SequencePositionIterator &  it ) const

pure virtual

Implemented in bpp::AbstractSequencePositionIterator.

setPosition()

virtual void bpp::SequencePositionIterator::setPosition ( unsigned int  pos )

pure virtual

Set the position of the iterator.

Parameters

pos	The position on the Sequence

Implemented in bpp::AbstractSequencePositionIterator.

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The documentation for this class was generated from the following file:

• Bpp/Seq/SequencePositionIterators.h