bpp::StreamSequenceIterator Class Reference

A sequence iterator based on a sequence stream. More...

#include <Bpp/Seq/Io/StreamSequenceIterator.h>

Inheritance diagram for bpp::StreamSequenceIterator:

Collaboration diagram for bpp::StreamSequenceIterator:

Public Member Functions
	StreamSequenceIterator (ISequenceStream &seqStream, std::istream &stream, const Alphabet *alphabet)
virtual	~StreamSequenceIterator ()
virtual Sequence *	nextSequence ()
virtual bool	hasMoreSequences () const

Private Member Functions
	StreamSequenceIterator (const StreamSequenceIterator &ssi)
StreamSequenceIterator &	operator= (const StreamSequenceIterator &ssi)

Private Attributes
const Alphabet *	alphabet_
const ISequenceStream *	seqStream_
std::istream *	stream_
BasicSequence *	nextSeq_

Detailed Description

A sequence iterator based on a sequence stream.

This iterator uses a bpp::BasicSequence object for storing sequences.

Definition at line 58 of file StreamSequenceIterator.h.

Constructor & Destructor Documentation

StreamSequenceIterator() [1/2]

StreamSequenceIterator::StreamSequenceIterator	(	ISequenceStream &	seqStream,
		std::istream &	stream,
		const Alphabet *	alphabet
	)

Definition at line 46 of file StreamSequenceIterator.cpp.

References nextSeq_, bpp::ISequenceStream::nextSequence(), seqStream_, and stream_.

~StreamSequenceIterator()

virtual bpp::StreamSequenceIterator::~StreamSequenceIterator ( )

inlinevirtual

Definition at line 70 of file StreamSequenceIterator.h.

StreamSequenceIterator() [2/2]

bpp::StreamSequenceIterator::StreamSequenceIterator ( const StreamSequenceIterator &  ssi )

inlineprivate

Definition at line 74 of file StreamSequenceIterator.h.

Member Function Documentation

hasMoreSequences()

virtual bool bpp::StreamSequenceIterator::hasMoreSequences ( ) const

inlinevirtual

Implements bpp::SequenceIterator.

Definition at line 92 of file StreamSequenceIterator.h.

References nextSeq_.

nextSequence()

Sequence * StreamSequenceIterator::nextSequence ( )

virtual

Implements bpp::SequenceIterator.

Definition at line 60 of file StreamSequenceIterator.cpp.

References alphabet_, nextSeq_, bpp::ISequenceStream::nextSequence(), seqStream_, and stream_.

operator=()

StreamSequenceIterator& bpp::StreamSequenceIterator::operator= ( const StreamSequenceIterator &  ssi )

inlineprivate

Definition at line 80 of file StreamSequenceIterator.h.

References alphabet_, nextSeq_, seqStream_, and stream_.

Member Data Documentation

alphabet_

const Alphabet* bpp::StreamSequenceIterator::alphabet_

private

Definition at line 62 of file StreamSequenceIterator.h.

Referenced by nextSequence(), and operator=().

nextSeq_

BasicSequence* bpp::StreamSequenceIterator::nextSeq_

private

Definition at line 65 of file StreamSequenceIterator.h.

Referenced by hasMoreSequences(), nextSequence(), operator=(), and StreamSequenceIterator().

seqStream_

const ISequenceStream* bpp::StreamSequenceIterator::seqStream_

private

Definition at line 63 of file StreamSequenceIterator.h.

Referenced by nextSequence(), operator=(), and StreamSequenceIterator().

stream_

std::istream* bpp::StreamSequenceIterator::stream_

private

Definition at line 64 of file StreamSequenceIterator.h.

Referenced by nextSequence(), operator=(), and StreamSequenceIterator().

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The documentation for this class was generated from the following files:

• Bpp/Seq/Io/StreamSequenceIterator.h
• Bpp/Seq/Io/StreamSequenceIterator.cpp