Rearranged Oriloc output example: Previous Index Next




Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia.
Genome size (bp): 1042519
Number of genes 893
Oriloc predictions: Origin 719 kb Terminus 194 kb
Worning et al., 2006: Origin 720 kb Terminus 197 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 66.916 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 280.57 kb, 307.12 kb
Consensus predictions: Origin 719 kb Terminus 194 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward97NA202
301NA714
GC-skew reverse524NA202
784NA722
AT-skew forward75NA157
338NA787
AT-skew reverse556NA276
777NA711
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)97 (202.3195 kb) leading0.237
98 (204.4395 kb)301 (713.8745 kb) lagging-0.224
302 (716.68 kb)440 (1041.646 kb) leading0.24
GC-skew reverse 441 (0 kb)524 (201.6305 kb) leading0.152
525 (202.4675 kb)784 (722.241 kb) lagging-0.252
785 (726.816 kb)893 (1041.646 kb) leading0.145
AT-skew forward 1 (0 kb)75 (156.5485 kb) leading-0.148
76 (158.0535 kb)338 (786.775 kb) NA-0.081
339 (787.5455 kb)440 (1041.646 kb) leading-0.134
AT-skew reverse 441 (0 kb)556 (275.7385 kb) NA0.094
557 (279.0735 kb)777 (710.708 kb) lagging0.153
778 (712.361 kb)893 (1041.646 kb) leading0.079
More G than C on the leading strand for replication.