Pyrococcus horikoshii

Rearranged Oriloc output example: Previous Index Next

Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.
Genome size (bp): 1738505
Number of genes 1952
Oriloc predictions: Origin 115 kb Terminus 1074 kb
Worning et al., 2006: Origin 111 kb Terminus 706 kb
Position(s) of the ORC/Cdc6 gene(s): 110.13 kb, 546.77 kb, 611.37 kb
Consensus predictions: Origin 115 kb Terminus 1074 kb
Significant breakpoints (p-value <0.05):

Breakpoints P-value Chromosome coordinate (kb)

GC-skew reverse 1654 NA 1342

AT-skew reverse 1477 NA 1053

Segments:

From (index/coord) To (index/coord) Strand Slope

GC-skew reverse 939 (0 kb) 1654 (1342.475 kb) NA -0.125

1655 (1347.605 kb) 1952 (1737.901 kb) lagging -0.237

AT-skew reverse 939 (0 kb) 1477 (1053.305 kb) leading -0.098

1478 (1054.568 kb) 1952 (1737.901 kb) lagging 0.006

More T than A on the leading strand for replication - for reverse encoded genes.

	Breakpoints	P-value	Chromosome coordinate (kb)
GC-skew reverse	1654	NA	1342
AT-skew reverse	1477	NA	1053

	From (index/coord)	To (index/coord)	Strand	Slope
GC-skew reverse	939 (0 kb)	1654 (1342.475 kb)	NA	-0.125
GC-skew reverse	1655 (1347.605 kb)	1952 (1737.901 kb)	lagging	-0.237
AT-skew reverse	939 (0 kb)	1477 (1053.305 kb)	leading	-0.098
AT-skew reverse	1478 (1054.568 kb)	1952 (1737.901 kb)	lagging	0.006