Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
Genome size (bp): 3806533
Number of genes 3439
Oriloc predictions: Origin 3723 kb Terminus 1820 kb
Worning et al., 2006: Origin 3740 kb Terminus 1845 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3757.762 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.1 kb
Consensus predictions: Origin 3723 kb Terminus 1820 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 990 | 0 | 1907 |
| GC-skew reverse | 2382 | 0 | 1807 |
| AT-skew forward | 941 | 0.00667 | 1763 |
| AT-skew reverse | 2350 | 0 | 1734 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 990 (1907.0155 kb) | leading | -0.026 |
| 991 (1909.8265 kb) | 1680 (3805.995 kb) | lagging | -0.088 | |
| GC-skew reverse | 1681 (0 kb) | 2382 (1806.5985 kb) | leading | 0.09 |
| 2383 (1809.431 kb) | 3439 (3805.995 kb) | lagging | 0.025 | |
| AT-skew forward | 1 (0 kb) | 941 (1762.848 kb) | leading | -0.205 |
| 942 (1764.5095 kb) | 1680 (3805.995 kb) | lagging | -0.088 | |
| AT-skew reverse | 1681 (0 kb) | 2350 (1733.9905 kb) | leading | 0.092 |
| 2351 (1735.4905 kb) | 3439 (3805.995 kb) | lagging | 0.213 |
More G than C on the leading strand for replication.