Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Genome size (bp): 1072315
Number of genes 1093
Oriloc predictions: Origin 5 kb Terminus 512 kb
Worning et al., 2006: Origin 100 kb Terminus 514 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 723.731 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 5 kb Terminus 512 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 354 | 0 | 486 |
| GC-skew reverse | 821 | 0 | 509 |
| AT-skew forward | 381 | 0.01333 | 545 |
| AT-skew reverse | 745 | 0.03333 | 281 |
| 803 | 0 | 458 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 354 (485.741 kb) | leading | 0.14 |
| 355 (486.27 kb) | 630 (1072.22 kb) | lagging | -0.058 | |
| GC-skew reverse | 631 (0 kb) | 821 (509.385 kb) | leading | 0.048 |
| 822 (510.0315 kb) | 1093 (1072.22 kb) | lagging | -0.099 | |
| AT-skew forward | 1 (0 kb) | 381 (544.911 kb) | leading | -0.17 |
| 382 (545.865 kb) | 630 (1072.22 kb) | lagging | -0.099 | |
| AT-skew reverse | 631 (0 kb) | 745 (281.249 kb) | leading | 0.089 |
| 746 (282.224 kb) | 803 (458.1885 kb) | leading | 0 | |
| 804 (459.648 kb) | 1093 (1072.22 kb) | lagging | 0.167 |
More G than C on the leading strand for replication.