Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
Genome size (bp): 5498450
Number of genes 5252
Oriloc predictions: Origin 4723 kb Terminus 2073 kb
Worning et al., 2006: Origin 4725 kb Terminus 2074 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 470.531 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3334.59 kb, 4669.26 kb
Consensus predictions: Origin 4723 kb Terminus 2073 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1206 | NA | 2131 |
| 2275 | NA | 4767 | |
| GC-skew reverse | 3506 | NA | 2141 |
| 3991 | NA | 2926 | |
| AT-skew forward | 538 | NA | 1104 |
| 2225 | NA | 4629 | |
| AT-skew reverse | 3921 | NA | 2806 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1206 (2131.238 kb) | leading | 0.115 |
| 1207 (2135.619 kb) | 2275 (4767.003 kb) | lagging | -0.008 | |
| 2276 (4767.947 kb) | 2642 (5498.423 kb) | leading | 0.088 | |
| GC-skew reverse | 2643 (0 kb) | 3506 (2140.5245 kb) | leading | 0.004 |
| 3507 (2144.1035 kb) | 3991 (2925.7145 kb) | lagging | -0.145 | |
| 3992 (2926.535 kb) | 5252 (5498.423 kb) | NA | -0.078 | |
| AT-skew forward | 1 (0 kb) | 538 (1103.961 kb) | leading | -0.181 |
| 539 (1105.272 kb) | 2225 (4628.6505 kb) | NA | -0.153 | |
| 2226 (4630.03 kb) | 2642 (5498.423 kb) | leading | -0.19 | |
| AT-skew reverse | 2643 (0 kb) | 3921 (2806.242 kb) | NA | 0.139 |
| 3922 (2807.0805 kb) | 5252 (5498.423 kb) | NA | 0.191 |