Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
Genome size (bp): 5528445
Number of genes 5306
Oriloc predictions: Origin 4788 kb Terminus 2014 kb
Worning et al., 2006: Origin 4783 kb Terminus 2010 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 470.533 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3404.43 kb, 4738.24 kb
Consensus predictions: Origin 4788 kb Terminus 2014 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1133 | NA | 1952 |
| 2327 | NA | 4841 | |
| GC-skew reverse | 3405 | NA | 1872 |
| 4044 | NA | 2998 | |
| AT-skew forward | 728 | NA | 1367 |
| 2282 | NA | 4735 | |
| AT-skew reverse | 3794 | NA | 2600 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1133 (1951.7345 kb) | leading | 0.114 |
| 1134 (1952.178 kb) | 2327 (4840.992 kb) | lagging | -0.002 | |
| 2328 (4842.344 kb) | 2643 (5528.418 kb) | leading | 0.088 | |
| GC-skew reverse | 2644 (0 kb) | 3405 (1871.685 kb) | leading | -0.003 |
| 3406 (1873.7945 kb) | 4044 (2998.4425 kb) | lagging | -0.149 | |
| 4045 (2999.0045 kb) | 5306 (5528.418 kb) | NA | -0.077 | |
| AT-skew forward | 1 (0 kb) | 728 (1367.1115 kb) | leading | -0.179 |
| 729 (1367.871 kb) | 2282 (4735.4295 kb) | NA | -0.152 | |
| 2283 (4739.699 kb) | 2643 (5528.418 kb) | leading | -0.196 | |
| AT-skew reverse | 2644 (0 kb) | 3794 (2600.049 kb) | NA | 0.148 |
| 3795 (2601.0175 kb) | 5306 (5528.418 kb) | NA | 0.192 |