Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2814816
Number of genes 2588
Oriloc predictions: Origin 0 kb Terminus 1378 kb
Worning et al., 2006: Origin 0 kb Terminus 1408 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2092.433 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.2 kb, 1717.99 kb
Consensus predictions: Origin 0 kb Terminus 1378 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 932 | NA | 1404 |
| GC-skew reverse | 1587 | NA | 1396 |
| 2410 | NA | 2535 | |
| AT-skew forward | 666 | NA | 1030 |
| 897 | NA | 1341 | |
| AT-skew reverse | 1563 | NA | 1309 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 932 (1403.621 kb) | leading | 0.143 |
| 933 (1404.425 kb) | 1249 (2814.602 kb) | lagging | -0.148 | |
| GC-skew reverse | 1250 (0 kb) | 1587 (1395.5045 kb) | leading | 0.156 |
| 1588 (1402.3345 kb) | 2410 (2535.3165 kb) | lagging | -0.129 | |
| 2411 (2536.4595 kb) | 2588 (2814.602 kb) | lagging | -0.177 | |
| AT-skew forward | 1 (0 kb) | 666 (1029.6115 kb) | leading | 0 |
| 667 (1037.9425 kb) | 897 (1340.7525 kb) | leading | 0.019 | |
| 898 (1341.223 kb) | 1249 (2814.602 kb) | lagging | -0.05 | |
| AT-skew reverse | 1250 (0 kb) | 1563 (1309.48 kb) | leading | 0.031 |
| 1564 (1317.8855 kb) | 2588 (2814.602 kb) | lagging | -0.002 |
More G than C on the leading strand for replication.