Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2821361
Number of genes 2892
Oriloc predictions: Origin 0 kb Terminus 1316 kb
Worning et al., 2006: Origin NA kb Terminus NA kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2106.86 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.2 kb
Consensus predictions: Origin 0 kb Terminus 1316 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 977 | NA | 1330 |
| GC-skew reverse | 1678 | NA | 1325 |
| 2536 | NA | 2319 | |
| AT-skew forward | 755 | NA | 1062 |
| 927 | NA | 1253 | |
| AT-skew reverse | 1623 | NA | 1007 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 977 (1330.262 kb) | leading | 0.155 |
| 978 (1333.773 kb) | 1355 (2821.147 kb) | lagging | -0.116 | |
| GC-skew reverse | 1356 (0 kb) | 1678 (1324.6605 kb) | leading | 0.133 |
| 1679 (1325.385 kb) | 2536 (2318.6995 kb) | lagging | -0.133 | |
| 2537 (2320.8695 kb) | 2892 (2821.147 kb) | lagging | -0.202 | |
| AT-skew forward | 1 (0 kb) | 755 (1062.436 kb) | leading | -0.006 |
| 756 (1064.5065 kb) | 927 (1252.907 kb) | leading | 0.021 | |
| 928 (1255.525 kb) | 1355 (2821.147 kb) | lagging | -0.052 | |
| AT-skew reverse | 1356 (0 kb) | 1623 (1006.745 kb) | leading | 0.04 |
| 1624 (1014.065 kb) | 2892 (2821.147 kb) | lagging | -0.012 |
More G than C on the leading strand for replication.