Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2902619
Number of genes 2650
Oriloc predictions: Origin 0 kb Terminus 1443 kb
Worning et al., 2006: Origin 0 kb Terminus 1476 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2197.065 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.2 kb, 745.9 kb, 1828.63 kb
Consensus predictions: Origin 0 kb Terminus 1443 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 966 | NA | 1463 |
| GC-skew reverse | 1586 | NA | 1179 |
| 2517 | NA | 2676 | |
| AT-skew forward | 722 | NA | 1131 |
| 915 | NA | 1376 | |
| AT-skew reverse | 1631 | NA | 1450 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 966 (1463.173 kb) | leading | 0.144 |
| 967 (1464.8385 kb) | 1282 (2902.405 kb) | lagging | -0.143 | |
| GC-skew reverse | 1283 (0 kb) | 1586 (1179.2785 kb) | leading | 0.15 |
| 1587 (1179.6685 kb) | 2517 (2676.2645 kb) | lagging | -0.13 | |
| 2518 (2680.7 kb) | 2650 (2902.405 kb) | lagging | -0.176 | |
| AT-skew forward | 1 (0 kb) | 722 (1131.3765 kb) | leading | -0.001 |
| 723 (1133.036 kb) | 915 (1375.977 kb) | leading | 0.021 | |
| 916 (1376.3155 kb) | 1282 (2902.405 kb) | lagging | -0.038 | |
| AT-skew reverse | 1283 (0 kb) | 1631 (1449.885 kb) | leading | 0.033 |
| 1632 (1450.6405 kb) | 2650 (2902.405 kb) | lagging | -0.009 |
More G than C on the leading strand for replication.