Rearranged Oriloc output example: Previous Index Next
Bacteria; Firmicutes; Bacillales; Staphylococcus.
Genome size (bp): 2799802
Number of genes 2576
Oriloc predictions: Origin 2 kb Terminus 1409 kb
Worning et al., 2006: Origin 0 kb Terminus 1414 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 2100.163 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1.2 kb, 1736.66 kb
Consensus predictions: Origin 2 kb Terminus 1409 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 999 | NA | 1433 |
| GC-skew reverse | 1615 | NA | 1420 |
| 2261 | NA | 2298 | |
| AT-skew forward | 652 | NA | 982 |
| 964 | NA | 1368 | |
| AT-skew reverse | 1516 | NA | 919 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 999 (1433.187 kb) | leading | 0.146 |
| 1000 (1433.921 kb) | 1298 (2799.588 kb) | lagging | -0.146 | |
| GC-skew reverse | 1299 (0 kb) | 1615 (1420.056 kb) | leading | 0.161 |
| 1616 (1421.736 kb) | 2261 (2298.1605 kb) | lagging | -0.137 | |
| 2262 (2298.6535 kb) | 2576 (2799.588 kb) | lagging | -0.192 | |
| AT-skew forward | 1 (0 kb) | 652 (981.628 kb) | leading | -0.001 |
| 653 (984.0765 kb) | 964 (1367.922 kb) | leading | 0.023 | |
| 965 (1368.7975 kb) | 1298 (2799.588 kb) | lagging | -0.052 | |
| AT-skew reverse | 1299 (0 kb) | 1516 (918.981 kb) | leading | 0.034 |
| 1517 (926.4965 kb) | 2576 (2799.588 kb) | lagging | -0.001 |
More G than C on the leading strand for replication.