Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.
Genome size (bp): 4969803
Number of genes 4324
Oriloc predictions: Origin 0 kb Terminus 2488 kb
Worning et al., 2006: Origin 0 kb Terminus 2494 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1388.423 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 7.56 kb, 2997.81 kb
Consensus predictions: Origin 0 kb Terminus 2488 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 668 | NA | 1293 |
| 1177 | NA | 2379 | |
| 1241 | NA | 2484 | |
| GC-skew reverse | 2529 | NA | 782 |
| 3181 | NA | 2511 | |
| AT-skew forward | 1282 | NA | 2603 |
| AT-skew reverse | 3158 | NA | 2468 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 668 (1293.0945 kb) | leading | 0.042 |
| 669 (1295.936 kb) | 1177 (2378.91 kb) | leading | 0.079 | |
| 1178 (2380.1825 kb) | 1241 (2484.218 kb) | leading | 0.01 | |
| 1242 (2487.2575 kb) | 2251 (4969.696 kb) | lagging | -0.136 | |
| GC-skew reverse | 2252 (0 kb) | 2529 (782.2895 kb) | leading | 0.142 |
| 2530 (783.7955 kb) | 3181 (2511.0705 kb) | leading | 0.149 | |
| 3182 (2514.632 kb) | 4324 (4969.696 kb) | lagging | -0.066 | |
| AT-skew forward | 1 (0 kb) | 1282 (2603.2745 kb) | leading | -0.176 |
| 1283 (2605.7675 kb) | 2251 (4969.696 kb) | lagging | -0.058 | |
| AT-skew reverse | 2252 (0 kb) | 3158 (2468.4555 kb) | leading | 0.064 |
| 3159 (2468.8385 kb) | 4324 (4969.696 kb) | lagging | 0.171 |
More G than C on the leading strand for replication.