Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.
Genome size (bp): 4519823
Number of genes 4136
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 3567 kb Terminus 1440 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 360.318 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3689.89 kb
Consensus predictions: Origin 3667 kb Terminus 1597 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 742 | 0.00667 | 1536 |
| GC-skew reverse | 2221 | 0 | 456 |
| AT-skew forward | 1088 | 0.04667 | 2325 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 742 (1536.2135 kb) | leading | 0.087 |
| 743 (1539.238 kb) | 2053 (4519.796 kb) | NA | 0.046 | |
| GC-skew reverse | 2054 (0 kb) | 2221 (456.4965 kb) | leading | 0.001 |
| 2222 (457.3315 kb) | 4136 (4519.796 kb) | NA | -0.066 | |
| AT-skew forward | 1 (0 kb) | 1088 (2325.104 kb) | NA | -0.149 |
| 1089 (2327.7335 kb) | 2053 (4519.796 kb) | NA | -0.172 |