Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.
Genome size (bp): 1581384
Number of genes 1142
Oriloc predictions: Origin 0 kb Terminus 715 kb
Worning et al., 2006: Origin 0 kb Terminus 723 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1581.243 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 146.98 kb
Consensus predictions: Origin 0 kb Terminus 715 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 313 | NA | 725 |
| GC-skew reverse | 799 | NA | 731 |
| 997 | NA | 1193 | |
| 1066 | NA | 1410 | |
| AT-skew forward | 319 | NA | 745 |
| AT-skew reverse | 817 | NA | 798 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 313 (725.141 kb) | leading | 0.342 |
| 314 (734.092 kb) | 578 (1580.794 kb) | lagging | -0.166 | |
| GC-skew reverse | 579 (0 kb) | 799 (731.202 kb) | leading | 0.192 |
| 800 (734.7545 kb) | 997 (1193.123 kb) | lagging | -0.4 | |
| 998 (1195.087 kb) | 1066 (1409.761 kb) | lagging | -0.104 | |
| 1067 (1411.6525 kb) | 1142 (1580.794 kb) | lagging | -0.332 | |
| AT-skew forward | 1 (0 kb) | 319 (744.7185 kb) | leading | -0.238 |
| 320 (745.775 kb) | 578 (1580.794 kb) | lagging | -0.078 | |
| AT-skew reverse | 579 (0 kb) | 817 (797.8245 kb) | leading | 0.111 |
| 818 (801.0195 kb) | 1142 (1580.794 kb) | lagging | 0.249 |
More G than C on the leading strand for replication.