Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.
Genome size (bp): 4296230
Number of genes 4104
Oriloc predictions: Origin 1767 kb Terminus 3790 kb
Worning et al., 2006: Origin 1791 kb Terminus 3689 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1678.007 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1694.68 kb
Consensus predictions: Origin 1767 kb Terminus 3790 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 728 | 0.00667 | 1728 |
| 1868 | 0.00667 | 3764 | |
| GC-skew reverse | 2921 | 0.01333 | 1596 |
| 3825 | 0.01333 | 3745 | |
| AT-skew forward | 742 | 0 | 1766 |
| 1747 | 0.00667 | 3540 | |
| AT-skew reverse | 2987 | 0 | 1725 |
| 3792 | 0.01 | 3694 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 728 (1728.3005 kb) | lagging | -0.109 |
| 729 (1730.429 kb) | 1868 (3764.391 kb) | leading | -0.034 | |
| 1869 (3765.4115 kb) | 2094 (4296.226 kb) | lagging | -0.103 | |
| GC-skew reverse | 2095 (0 kb) | 2921 (1596.304 kb) | lagging | 0.043 |
| 2922 (1597.1375 kb) | 3825 (3744.558 kb) | leading | 0.109 | |
| 3826 (3747.419 kb) | 4104 (4296.226 kb) | lagging | 0.042 | |
| AT-skew forward | 1 (0 kb) | 742 (1765.6785 kb) | lagging | -0.021 |
| 743 (1773.0925 kb) | 1747 (3540.017 kb) | leading | -0.147 | |
| 1748 (3540.3455 kb) | 2094 (4296.226 kb) | NA | -0.049 | |
| AT-skew reverse | 2095 (0 kb) | 2987 (1724.932 kb) | lagging | 0.129 |
| 2988 (1728.3575 kb) | 3792 (3693.6025 kb) | leading | 0.014 | |
| 3793 (3694.356 kb) | 4104 (4296.226 kb) | NA | 0.093 |
More G than C on the leading strand for replication.