Rearranged Oriloc output example: Previous Index Next
SC-B67 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.
Genome size (bp): 4755700
Number of genes 4441
Oriloc predictions: Origin 4017 kb Terminus 1645 kb
Worning et al., 2006: Origin 4019 kb Terminus 1647 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 4531.682 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin 4017 kb Terminus 1645 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 819 | 0.00444 | 1478 |
| 888 | 0 | 1619 | |
| 1788 | 0.00444 | 3985 | |
| GC-skew reverse | 2816 | 0 | 1663 |
| 4128 | 0 | 4004 | |
| AT-skew forward | 630 | 0.06667 | 1202 |
| 1774 | 0.04667 | 3927 | |
| AT-skew reverse | 3046 | 0.06 | 2119 |
| 4227 | 0.01 | 4239 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 819 (1478.3285 kb) | leading | 0.108 |
| 820 (1486.979 kb) | 888 (1619.373 kb) | leading | 0.21 | |
| 889 (1620.3445 kb) | 1788 (3985.349 kb) | lagging | -0.009 | |
| 1789 (3987.1325 kb) | 2154 (4755.673 kb) | leading | 0.095 | |
| GC-skew reverse | 2155 (0 kb) | 2816 (1663.485 kb) | leading | 0.028 |
| 2817 (1667.743 kb) | 4128 (4003.5985 kb) | lagging | -0.1 | |
| 4129 (4005.7885 kb) | 4441 (4755.673 kb) | leading | 0.013 | |
| AT-skew forward | 1 (0 kb) | 630 (1202.1115 kb) | leading | -0.203 |
| 631 (1204.9115 kb) | 1774 (3926.6775 kb) | NA | -0.164 | |
| 1775 (3936.686 kb) | 2154 (4755.673 kb) | leading | -0.213 | |
| AT-skew reverse | 2155 (0 kb) | 3046 (2119.09 kb) | NA | 0.179 |
| 3047 (2119.9635 kb) | 4227 (4238.741 kb) | lagging | 0.216 | |
| 4228 (4241.724 kb) | 4441 (4755.673 kb) | leading | 0.155 |