Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus.
Genome size (bp): 1913428
Number of genes 1791
Oriloc predictions: Origin 774 kb Terminus 1621 kb
Worning et al., 2006: Origin 734 kb Terminus 1620 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 122.554 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 1112.81 kb
Consensus predictions: Origin 774 kb Terminus 1621 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 566 | NA | 1192 |
| 838 | NA | 1637 | |
| GC-skew reverse | 1280 | NA | 753 |
| 1642 | NA | 1619 | |
| AT-skew forward | 363 | NA | 783 |
| 763 | NA | 1531 | |
| AT-skew reverse | 1273 | NA | 745 |
| 1454 | NA | 1204 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 566 (1191.633 kb) | NA | -0.003 |
| 567 (1192.331 kb) | 838 (1637.3735 kb) | leading | 0.18 | |
| 839 (1642.6725 kb) | 923 (1913.179 kb) | lagging | -0.14 | |
| GC-skew reverse | 924 (0 kb) | 1280 (752.8205 kb) | lagging | -0.106 |
| 1281 (753.4345 kb) | 1642 (1619.365 kb) | leading | 0.073 | |
| 1643 (1623.526 kb) | 1791 (1913.179 kb) | lagging | -0.081 | |
| AT-skew forward | 1 (0 kb) | 363 (782.5735 kb) | lagging | -0.056 |
| 364 (783.918 kb) | 763 (1530.6765 kb) | leading | -0.09 | |
| 764 (1532.872 kb) | 923 (1913.179 kb) | NA | -0.051 | |
| AT-skew reverse | 924 (0 kb) | 1273 (745.1355 kb) | lagging | 0.09 |
| 1274 (746.8015 kb) | 1454 (1203.743 kb) | leading | 0.055 | |
| 1455 (1206.656 kb) | 1791 (1913.179 kb) | NA | 0.027 |
More G than C on the leading strand for replication - for reverse encoded genes.